Coordinate-aware organelle record

Vitex trifolia chloroplast genome

Available NC_062602.1 154,444 bp 131 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

131 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	8	82	74
psbA	gene	photosystem-ii	−	433	1492	1059
trnK-UUU	gene	translation-rna	−	1723	4303	2580
matK	gene	other	−	2023	3553	1530
rps16	gene	ribosomal-protein	−	5115	6274	1159
trnQ-UUG	gene	translation-rna	−	7515	7587	72
psbK	gene	photosystem-ii	+	7920	8106	186
psbI	gene	photosystem-ii	+	8488	8599	111
trnS-GCU	gene	translation-rna	−	8727	8815	88
trnS-CGA	gene	translation-rna	+	9535	10285	750
trnR-UCU	gene	translation-rna	+	10465	10537	72
atpA	gene	atp-synthase	−	10640	12164	1524
atpF	gene	atp-synthase	−	12244	13513	1269
atpH	gene	atp-synthase	−	13912	14158	246
atpI	gene	atp-synthase	−	15193	15937	744
rps2	gene	ribosomal-protein	−	16186	16897	711
rpoC2	gene	rna-polymerase	−	17130	21312	4182
rpoC1	gene	rna-polymerase	−	21466	24307	2841
rpoB	gene	rna-polymerase	−	24333	27522	3189
trnC-GCA	gene	translation-rna	+	28718	28789	71
petN	gene	cytochrome	+	29644	29734	90
psbM	gene	photosystem-ii	−	30740	30845	105
trnD-GUC	gene	translation-rna	−	31371	31445	74
trnY-GUA	gene	translation-rna	−	31553	31637	84
trnE-UUC	gene	translation-rna	−	31696	31769	73
trnT-GGU	gene	translation-rna	+	32195	32267	72
psbD	gene	photosystem-ii	+	33640	34702	1062
psbC	gene	photosystem-ii	+	34649	36071	1422
trnS-UGA	gene	translation-rna	−	36322	36415	93
psbZ	gene	photosystem-ii	+	36748	36937	189
trnG-GCC	gene	translation-rna	+	37206	37277	71
trnM-CAU	gene	translation-rna	−	37434	37508	74
rps14	gene	ribosomal-protein	−	37657	37960	303
psaB	gene	photosystem-i	−	38082	40287	2205
psaA	gene	photosystem-i	−	40312	42565	2253
ycf3	gene	other	−	43298	45242	1944
trnS-GGA	gene	translation-rna	+	46035	46122	87
rps4	gene	ribosomal-protein	−	46403	47009	606
trnT-UGU	gene	translation-rna	−	47377	47450	73
trnL-UAA	gene	translation-rna	+	48113	48683	570
trnF-GAA	gene	translation-rna	+	48988	49061	73
ndhJ	gene	nad-dehydrogenase	−	49730	50207	477
ndhK	gene	nad-dehydrogenase	−	50313	50991	678
ndhC	gene	nad-dehydrogenase	−	51044	51407	363
trnM-CAU	gene	translation-rna	+	53279	53352	73
atpE	gene	atp-synthase	−	53578	53980	402
atpB	gene	atp-synthase	−	53976	55473	1497
rbcL	gene	other	+	56279	57722	1443
accD	gene	other	+	58419	59901	1482
psaI	gene	photosystem-i	+	60626	60737	111
ycf4	gene	other	+	61177	61732	555
cemA	gene	other	+	62394	63084	690
petA	gene	cytochrome	+	63298	64261	963
psbJ	gene	photosystem-ii	−	65311	65434	123
psbL	gene	photosystem-ii	−	65567	65684	117
psbF	gene	photosystem-ii	−	65707	65827	120
psbE	gene	photosystem-ii	−	65841	66093	252
petL	gene	cytochrome	+	67022	67118	96
petG	gene	cytochrome	+	67292	67406	114
trnW-CCA	gene	translation-rna	−	67528	67602	74
trnP-UGG	gene	translation-rna	−	67757	67831	74
psaJ	gene	photosystem-i	+	68108	68243	135
rpl33	gene	ribosomal-protein	+	68722	68923	201
rps18	gene	ribosomal-protein	+	69091	69397	306
rpl20	gene	ribosomal-protein	−	69654	70041	387
rps12	gene	ribosomal-protein	−	70873	99266	28393
rps12	gene	ribosomal-protein	+	70873	140569	69696
clpP	gene	other	−	71119	73102	1983
psbB	gene	photosystem-ii	+	73571	75098	1527
psbT	gene	photosystem-ii	+	75300	75408	108
psbN	gene	photosystem-ii	−	75475	75607	132
psbH	gene	photosystem-ii	+	75694	75934	240
petB	gene	cytochrome	+	76058	77444	1386
petD	gene	cytochrome	+	78330	78855	525
rpoA	gene	rna-polymerase	−	79016	80036	1020
rps11	gene	ribosomal-protein	−	80107	80524	417
rpl36	gene	ribosomal-protein	−	80625	80739	114
infA	gene	other	−	80834	81068	234
rps8	gene	ribosomal-protein	−	81192	81597	405
rpl14	gene	ribosomal-protein	−	81781	82150	369
rpl16	gene	ribosomal-protein	−	82276	82687	411
rps3	gene	ribosomal-protein	−	83746	84409	663
rpl22	gene	ribosomal-protein	−	84393	84861	468
rps19	gene	ribosomal-protein	−	84912	85191	279
rpl2	gene	ribosomal-protein	−	85251	86733	1482
rpl23	gene	ribosomal-protein	−	86751	87033	282
trnM-CAU	gene	translation-rna	−	87198	87272	74
ycf2	gene	other	+	87380	94244	6864
ycf15	gene	other	+	94385	94583	198
trnL-CAA	gene	translation-rna	−	94843	94924	81
ndhB	gene	nad-dehydrogenase	−	95471	97683	2212
rps7	gene	ribosomal-protein	−	97946	98414	468
trnV-GAC	gene	translation-rna	+	100864	100936	72
rrn16S	gene	ribosomal-rna	+	101163	102654	1491
trnI	gene	translation-rna	+	102952	103971	1019
trnA-UGC	gene	translation-rna	+	104035	104913	878
rrn23S	gene	ribosomal-rna	+	105081	107892	2811
rrn4.5S	gene	ribosomal-rna	−	107990	108255	265
rrn5S	gene	ribosomal-rna	+	108348	108479	131
trnR-ACG	gene	translation-rna	+	108712	108786	74
trnN-GUU	gene	translation-rna	−	109355	109427	72
ycf1	gene	other	+	109758	110910	1152
ndhF	gene	nad-dehydrogenase	−	110803	113050	2247
trnL-UAG	gene	translation-rna	+	114578	114658	80
ccsA	gene	other	+	114748	115735	987
ndhD	gene	nad-dehydrogenase	−	116002	117502	1500
psaC	gene	photosystem-i	−	117630	117876	246
ndhE	gene	nad-dehydrogenase	−	118138	118444	306
ndhG	gene	nad-dehydrogenase	−	118657	119188	531
ndhI	gene	nad-dehydrogenase	−	119548	120055	507
ndhA	gene	nad-dehydrogenase	−	120137	122319	2182
ndhH	gene	nad-dehydrogenase	−	122320	123502	1182
rps15	gene	ribosomal-protein	−	123600	123873	273
ycf1	gene	other	−	124287	129834	5547
trnN-GUU	gene	translation-rna	+	130165	130237	72
trnR-ACG	gene	translation-rna	−	130806	130880	74
rrn5S	gene	ribosomal-rna	−	131113	131244	131
rrn4.5S	gene	ribosomal-rna	+	131337	131602	265
rrn23S	gene	ribosomal-rna	−	131700	134511	2811
trnA-UGC	gene	translation-rna	−	134679	135557	878
trnI	gene	translation-rna	−	135621	136640	1019
rrn16S	gene	ribosomal-rna	−	136938	138429	1491
trnV-GAC	gene	translation-rna	−	138656	138728	72
rps7	gene	ribosomal-protein	+	141178	141646	468
ndhB	gene	nad-dehydrogenase	+	141909	144121	2212
trnL-CAA	gene	translation-rna	+	144668	144749	81
ycf15	gene	other	−	145009	145207	198
ycf2	gene	other	−	145348	152212	6864
trnM-CAU	gene	translation-rna	+	152320	152394	74
rpl23	gene	ribosomal-protein	+	152559	152841	282
rpl2	gene	ribosomal-protein	+	152859	154341	1482

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeNC_062602.1DNA · accDNC_062602DNA · atpBNC_062602DNA · matKNC_062602DNA · ndhFNC_062602DNA · psbANC_062602DNA · rbcLNC_062602DNA · rps12NC_062602DNA · ycf1NC_062602