Vitex trifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_062602.1 · 9–82 bp · −
psbA · NC_062602.1 · 434–1,492 bp · −
trnK-UUU · NC_062602.1 · 1,724–4,303 bp · −
matK · NC_062602.1 · 2,024–3,553 bp · −
rps16 · NC_062602.1 · 5,116–6,274 bp · −
trnQ-UUG · NC_062602.1 · 7,516–7,587 bp · −
trnS-GCU · NC_062602.1 · 8,728–8,815 bp · −
atpA · NC_062602.1 · 10,641–12,164 bp · −
atpF · NC_062602.1 · 12,245–13,513 bp · −
atpH · NC_062602.1 · 13,913–14,158 bp · −
atpI · NC_062602.1 · 15,194–15,937 bp · −
rps2 · NC_062602.1 · 16,187–16,897 bp · −
rpoC2 · NC_062602.1 · 17,131–21,312 bp · −
rpoC1 · NC_062602.1 · 21,467–24,307 bp · −
rpoB · NC_062602.1 · 24,334–27,522 bp · −
psbM · NC_062602.1 · 30,741–30,845 bp · −
trnD-GUC · NC_062602.1 · 31,372–31,445 bp · −
trnY-GUA · NC_062602.1 · 31,554–31,637 bp · −
trnE-UUC · NC_062602.1 · 31,697–31,769 bp · −
trnS-UGA · NC_062602.1 · 36,323–36,415 bp · −
trnM-CAU · NC_062602.1 · 37,435–37,508 bp · −
rps14 · NC_062602.1 · 37,658–37,960 bp · −
psaB · NC_062602.1 · 38,083–40,287 bp · −
psaA · NC_062602.1 · 40,313–42,565 bp · −
ycf3 · NC_062602.1 · 43,299–45,242 bp · −
rps4 · NC_062602.1 · 46,404–47,009 bp · −
trnT-UGU · NC_062602.1 · 47,378–47,450 bp · −
ndhJ · NC_062602.1 · 49,731–50,207 bp · −
ndhK · NC_062602.1 · 50,314–50,991 bp · −
ndhC · NC_062602.1 · 51,045–51,407 bp · −
atpE · NC_062602.1 · 53,579–53,980 bp · −
atpB · NC_062602.1 · 53,977–55,473 bp · −
psbJ · NC_062602.1 · 65,312–65,434 bp · −
psbL · NC_062602.1 · 65,568–65,684 bp · −
psbF · NC_062602.1 · 65,708–65,827 bp · −
psbE · NC_062602.1 · 65,842–66,093 bp · −
trnW-CCA · NC_062602.1 · 67,529–67,602 bp · −
trnP-UGG · NC_062602.1 · 67,758–67,831 bp · −
rpl20 · NC_062602.1 · 69,655–70,041 bp · −
rps12 · NC_062602.1 · 70,874–70,987 bp · −
rps12 · NC_062602.1 · 99,024–99,266 bp · −
clpP · NC_062602.1 · 71,120–73,102 bp · −
psbN · NC_062602.1 · 75,476–75,607 bp · −
rpoA · NC_062602.1 · 79,017–80,036 bp · −
rps11 · NC_062602.1 · 80,108–80,524 bp · −
rpl36 · NC_062602.1 · 80,626–80,739 bp · −
infA · NC_062602.1 · 80,835–81,068 bp · −
rps8 · NC_062602.1 · 81,193–81,597 bp · −
rpl14 · NC_062602.1 · 81,782–82,150 bp · −
rpl16 · NC_062602.1 · 82,277–82,687 bp · −
rps3 · NC_062602.1 · 83,747–84,409 bp · −
rpl22 · NC_062602.1 · 84,394–84,861 bp · −
rps19 · NC_062602.1 · 84,913–85,191 bp · −
rpl2 · NC_062602.1 · 85,252–86,733 bp · −
rpl23 · NC_062602.1 · 86,752–87,033 bp · −
trnM-CAU · NC_062602.1 · 87,199–87,272 bp · −
trnL-CAA · NC_062602.1 · 94,844–94,924 bp · −
ndhB · NC_062602.1 · 95,472–97,683 bp · −
rps7 · NC_062602.1 · 97,947–98,414 bp · −
rrn4.5S · NC_062602.1 · 107,991–108,255 bp · −
trnN-GUU · NC_062602.1 · 109,356–109,427 bp · −
ndhF · NC_062602.1 · 110,804–113,050 bp · −
ndhD · NC_062602.1 · 116,003–117,502 bp · −
psaC · NC_062602.1 · 117,631–117,876 bp · −
ndhE · NC_062602.1 · 118,139–118,444 bp · −
ndhG · NC_062602.1 · 118,658–119,188 bp · −
ndhI · NC_062602.1 · 119,549–120,055 bp · −
ndhA · NC_062602.1 · 120,138–122,319 bp · −
ndhH · NC_062602.1 · 122,321–123,502 bp · −
rps15 · NC_062602.1 · 123,601–123,873 bp · −
ycf1 · NC_062602.1 · 124,288–129,834 bp · −
trnR-ACG · NC_062602.1 · 130,807–130,880 bp · −
rrn5S · NC_062602.1 · 131,114–131,244 bp · −
rrn23S · NC_062602.1 · 131,701–134,511 bp · −
trnA-UGC · NC_062602.1 · 134,680–135,557 bp · −
trnI · NC_062602.1 · 135,622–136,640 bp · −
rrn16S · NC_062602.1 · 136,939–138,429 bp · −
trnV-GAC · NC_062602.1 · 138,657–138,728 bp · −
ycf15 · NC_062602.1 · 145,010–145,207 bp · −
ycf2 · NC_062602.1 · 145,349–152,212 bp · −
psbK · NC_062602.1 · 7,921–8,106 bp · +
psbI · NC_062602.1 · 8,489–8,599 bp · +
trnS-CGA · NC_062602.1 · 9,536–10,285 bp · +
trnR-UCU · NC_062602.1 · 10,466–10,537 bp · +
trnC-GCA · NC_062602.1 · 28,719–28,789 bp · +
petN · NC_062602.1 · 29,645–29,734 bp · +
trnT-GGU · NC_062602.1 · 32,196–32,267 bp · +
psbD · NC_062602.1 · 33,641–34,702 bp · +
psbC · NC_062602.1 · 34,650–36,071 bp · +
psbZ · NC_062602.1 · 36,749–36,937 bp · +
trnG-GCC · NC_062602.1 · 37,207–37,277 bp · +
trnS-GGA · NC_062602.1 · 46,036–46,122 bp · +
trnL-UAA · NC_062602.1 · 48,114–48,683 bp · +
trnF-GAA · NC_062602.1 · 48,989–49,061 bp · +
trnM-CAU · NC_062602.1 · 53,280–53,352 bp · +
rbcL · NC_062602.1 · 56,280–57,722 bp · +
accD · NC_062602.1 · 58,420–59,901 bp · +
psaI · NC_062602.1 · 60,627–60,737 bp · +
ycf4 · NC_062602.1 · 61,178–61,732 bp · +
cemA · NC_062602.1 · 62,395–63,084 bp · +
petA · NC_062602.1 · 63,299–64,261 bp · +
petL · NC_062602.1 · 67,023–67,118 bp · +
petG · NC_062602.1 · 67,293–67,406 bp · +
psaJ · NC_062602.1 · 68,109–68,243 bp · +
rpl33 · NC_062602.1 · 68,723–68,923 bp · +
rps18 · NC_062602.1 · 69,092–69,397 bp · +
rps12 · NC_062602.1 · 140,327–140,569 bp · +
psbB · NC_062602.1 · 73,572–75,098 bp · +
psbT · NC_062602.1 · 75,301–75,408 bp · +
psbH · NC_062602.1 · 75,695–75,934 bp · +
petB · NC_062602.1 · 76,059–77,444 bp · +
petD · NC_062602.1 · 78,331–78,855 bp · +
ycf2 · NC_062602.1 · 87,381–94,244 bp · +
ycf15 · NC_062602.1 · 94,386–94,583 bp · +
trnV-GAC · NC_062602.1 · 100,865–100,936 bp · +
rrn16S · NC_062602.1 · 101,164–102,654 bp · +
trnI · NC_062602.1 · 102,953–103,971 bp · +
trnA-UGC · NC_062602.1 · 104,036–104,913 bp · +
rrn23S · NC_062602.1 · 105,082–107,892 bp · +
rrn5S · NC_062602.1 · 108,349–108,479 bp · +
trnR-ACG · NC_062602.1 · 108,713–108,786 bp · +
ycf1 · NC_062602.1 · 109,759–110,910 bp · +
trnL-UAG · NC_062602.1 · 114,579–114,658 bp · +
ccsA · NC_062602.1 · 114,749–115,735 bp · +
trnN-GUU · NC_062602.1 · 130,166–130,237 bp · +
rrn4.5S · NC_062602.1 · 131,338–131,602 bp · +
rps7 · NC_062602.1 · 141,179–141,646 bp · +
ndhB · NC_062602.1 · 141,910–144,121 bp · +
trnL-CAA · NC_062602.1 · 144,669–144,749 bp · +
trnM-CAU · NC_062602.1 · 152,321–152,394 bp · +
rpl23 · NC_062602.1 · 152,560–152,841 bp · +
rpl2 · NC_062602.1 · 152,860–154,341 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Vitex trifolia
ANNOTATED PLASTOME
NC_062602.1
154,444 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38611 77222 115833 154444 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI trnA-UGC rrn23S rrn5S trnR-ACG ycf1 trnL-UAG ccsA trnN-GUU rrn4.5S rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 rrn4.5S trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn23S trnA-UGC trnI rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 9 82 74 Locate
psbA gene − 434 1492 1059 Locate
trnK-UUU gene − 1724 4303 2580 Locate
matK gene − 2024 3553 1530 Locate
rps16 gene − 5116 6274 1159 Locate
trnQ-UUG gene − 7516 7587 72 Locate
psbK gene + 7921 8106 186 Locate
psbI gene + 8489 8599 111 Locate
trnS-GCU gene − 8728 8815 88 Locate
trnS-CGA gene + 9536 10285 750 Locate
trnR-UCU gene + 10466 10537 72 Locate
atpA gene − 10641 12164 1524 Locate
atpF gene − 12245 13513 1269 Locate
atpH gene − 13913 14158 246 Locate
atpI gene − 15194 15937 744 Locate
rps2 gene − 16187 16897 711 Locate
rpoC2 gene − 17131 21312 4182 Locate
rpoC1 gene − 21467 24307 2841 Locate
rpoB gene − 24334 27522 3189 Locate
trnC-GCA gene + 28719 28789 71 Locate
petN gene + 29645 29734 90 Locate
psbM gene − 30741 30845 105 Locate
trnD-GUC gene − 31372 31445 74 Locate
trnY-GUA gene − 31554 31637 84 Locate
trnE-UUC gene − 31697 31769 73 Locate
trnT-GGU gene + 32196 32267 72 Locate
psbD gene + 33641 34702 1062 Locate
psbC gene + 34650 36071 1422 Locate
trnS-UGA gene − 36323 36415 93 Locate
psbZ gene + 36749 36937 189 Locate
trnG-GCC gene + 37207 37277 71 Locate
trnM-CAU gene − 37435 37508 74 Locate
rps14 gene − 37658 37960 303 Locate
psaB gene − 38083 40287 2205 Locate
psaA gene − 40313 42565 2253 Locate
ycf3 gene − 43299 45242 1944 Locate
trnS-GGA gene + 46036 46122 87 Locate
rps4 gene − 46404 47009 606 Locate
trnT-UGU gene − 47378 47450 73 Locate
trnL-UAA gene + 48114 48683 570 Locate
trnF-GAA gene + 48989 49061 73 Locate
ndhJ gene − 49731 50207 477 Locate
ndhK gene − 50314 50991 678 Locate
ndhC gene − 51045 51407 363 Locate
trnM-CAU gene + 53280 53352 73 Locate
atpE gene − 53579 53980 402 Locate
atpB gene − 53977 55473 1497 Locate
rbcL gene + 56280 57722 1443 Locate
accD gene + 58420 59901 1482 Locate
psaI gene + 60627 60737 111 Locate
ycf4 gene + 61178 61732 555 Locate
cemA gene + 62395 63084 690 Locate
petA gene + 63299 64261 963 Locate
psbJ gene − 65312 65434 123 Locate
psbL gene − 65568 65684 117 Locate
psbF gene − 65708 65827 120 Locate
psbE gene − 65842 66093 252 Locate
petL gene + 67023 67118 96 Locate
petG gene + 67293 67406 114 Locate
trnW-CCA gene − 67529 67602 74 Locate
trnP-UGG gene − 67758 67831 74 Locate
psaJ gene + 68109 68243 135 Locate
rpl33 gene + 68723 68923 201 Locate
rps18 gene + 69092 69397 306 Locate
rpl20 gene − 69655 70041 387 Locate
rps12 gene − 70874 70987 114 Locate
clpP gene − 71120 73102 1983 Locate
psbB gene + 73572 75098 1527 Locate
psbT gene + 75301 75408 108 Locate
psbN gene − 75476 75607 132 Locate
psbH gene + 75695 75934 240 Locate
petB gene + 76059 77444 1386 Locate
petD gene + 78331 78855 525 Locate
rpoA gene − 79017 80036 1020 Locate
rps11 gene − 80108 80524 417 Locate
rpl36 gene − 80626 80739 114 Locate
infA gene − 80835 81068 234 Locate
rps8 gene − 81193 81597 405 Locate
rpl14 gene − 81782 82150 369 Locate
rpl16 gene − 82277 82687 411 Locate
rps3 gene − 83747 84409 663 Locate
rpl22 gene − 84394 84861 468 Locate
rps19 gene − 84913 85191 279 Locate
rpl2 gene − 85252 86733 1482 Locate
rpl23 gene − 86752 87033 282 Locate
trnM-CAU gene − 87199 87272 74 Locate
ycf2 gene + 87381 94244 6864 Locate
ycf15 gene + 94386 94583 198 Locate
trnL-CAA gene − 94844 94924 81 Locate
ndhB gene − 95472 97683 2212 Locate
rps7 gene − 97947 98414 468 Locate
rps12 gene − 99024 99266 243 Locate
trnV-GAC gene + 100865 100936 72 Locate
rrn16S gene + 101164 102654 1491 Locate
trnI gene + 102953 103971 1019 Locate
trnA-UGC gene + 104036 104913 878 Locate
rrn23S gene + 105082 107892 2811 Locate
rrn4.5S gene − 107991 108255 265 Locate
rrn5S gene + 108349 108479 131 Locate
trnR-ACG gene + 108713 108786 74 Locate
trnN-GUU gene − 109356 109427 72 Locate
ycf1 gene + 109759 110910 1152 Locate
ndhF gene − 110804 113050 2247 Locate
trnL-UAG gene + 114579 114658 80 Locate
ccsA gene + 114749 115735 987 Locate
ndhD gene − 116003 117502 1500 Locate
psaC gene − 117631 117876 246 Locate
ndhE gene − 118139 118444 306 Locate
ndhG gene − 118658 119188 531 Locate
ndhI gene − 119549 120055 507 Locate
ndhA gene − 120138 122319 2182 Locate
ndhH gene − 122321 123502 1182 Locate
rps15 gene − 123601 123873 273 Locate
ycf1 gene − 124288 129834 5547 Locate
trnN-GUU gene + 130166 130237 72 Locate
trnR-ACG gene − 130807 130880 74 Locate
rrn5S gene − 131114 131244 131 Locate
rrn4.5S gene + 131338 131602 265 Locate
rrn23S gene − 131701 134511 2811 Locate
trnA-UGC gene − 134680 135557 878 Locate
trnI gene − 135622 136640 1019 Locate
rrn16S gene − 136939 138429 1491 Locate
trnV-GAC gene − 138657 138728 72 Locate
rps12 gene + 140327 140569 243 Locate
rps7 gene + 141179 141646 468 Locate
ndhB gene + 141910 144121 2212 Locate
trnL-CAA gene + 144669 144749 81 Locate
ycf15 gene − 145010 145207 198 Locate
ycf2 gene − 145349 152212 6864 Locate
trnM-CAU gene + 152321 152394 74 Locate
rpl23 gene + 152560 152841 282 Locate
rpl2 gene + 152860 154341 1482 Locate
Status Available
Accession NC_062602.1
Length 154,444 bp
GC content 38.3%
Annotated genes 131
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources