Reference-library structure

Pathway categories

The current release groups 111 enzyme-family modules into six secondary-metabolism pathway classes. Counts describe the bundled computational evidence package, not experimentally measured pathway completeness.

01

terpenoid

Terpenoid biosynthesis

Reference-library modules associated with isoprenoid precursor formation, terpene synthases, tailoring enzymes and glycosylation.

Family modules
22
Observed modules
22
Stable modules
22
Candidate records
33,748
Source assignments
183,973
Browse category
02

phenylpropanoid

Phenylpropanoid biosynthesis

Reference-library modules spanning the core phenylpropanoid route, lignin-related enzymes and oxidative polymerisation families.

Family modules
13
Observed modules
13
Stable modules
13
Candidate records
42,077
Source assignments
85,317
Browse category
03

rosmarinic acid

Rosmarinic-acid biosynthesis

Reference-library modules used to screen candidate families associated with rosmarinic-acid biosynthetic context.

Family modules
7
Observed modules
7
Stable modules
1
Candidate records
97
Source assignments
15,389
Browse category
04

flavonoid

Flavonoid biosynthesis

Reference-library modules associated with flavonoid backbone formation, reduction, oxidation and glycosylation.

Family modules
16
Observed modules
16
Stable modules
16
Candidate records
31,304
Source assignments
41,074
Browse category
05

alkaloid

Alkaloid-related biosynthesis

Reference-library modules used for broad alkaloid-related enzyme-family screening across compatible proteomes.

Family modules
34
Observed modules
34
Stable modules
34
Candidate records
44,083
Source assignments
93,513
Browse category
06

steroid

Steroid and sterol biosynthesis

Reference-library modules associated with sterol and brassinosteroid-related biosynthetic enzyme families.

Family modules
19
Observed modules
19
Stable modules
19
Candidate records
22,020
Source assignments
32,041
Browse category
Category membership is a reference-library classification

It does not assert that every module is present, expressed or biochemically validated in every Lamiaceae species.