Versioned data export

Pathway downloads

Download source tables and generated public summaries for the current pathway release. File size, format and SHA256 are displayed when the file is stored in the release package.

Portal JSON Methods & limitations

Pathway classes: 6
Family modules: 111
Public species: 80
Candidate records: 173,329
Gene-tree candidates: 238
Motif candidates: 1,287

Bundled source files

Release manifest

Files are served only from an allow-listed pathway data directory.

File	Dataset	Format	Size	SHA256
Pathway portal snapshotComplete versioned pathway portal data.`pathway_portal.json`	Portal	JSON	110.4 MB	`3864f7b31340a7bccf0e2f02c451a9466ac3629b49d1ea1e809eeb212650b125`
Lamiaceae family countsSpecies × pathway-family assignment counts.`lamiaceae_family_counts.tsv`	Families	TSV	66.0 KB	`a2f47fc1cceb74cb4a2ae591ced88145fb7259c7847b2b0d5ee81c1ca3c73cc5`
Pathway-family catalogReference catalog of six pathway classes and 111 modules.`pathway_family_catalog.tsv`	Families	TSV	1.92 KB	`aebc72a441d6e0cb58c9b3a061f2c515fa960082a2a571d8504b7c3aced2a80e`
Gene-tree candidate tableCandidate records from the gene-tree workflow.`lamiales_gene_tree_candidates.tsv`	Candidates	TSV	63.7 KB	`609ef399f57fd0e627658c2b3714906d17ad7bccfc78cee592e87d73f3c37d54`
TPS motif-screen candidatesCandidate records from the TPS motif-screen proxy.`lamiales_tps_motif_candidates.tsv`	Candidates	TSV	135.7 KB	`8d42fd40c47b71a9ad03250713642b3edf8b8ed6bfab75ba4c874490361bd1ef`
Validation statusValidation and availability status for each evidence layer.`lamiales_validation_status.tsv`	Methods	TSV	788 B	`d89b652805b259ddfaf33d65f1d046262f8bb4f966c6866b646d341756cae124`
Local cluster proxyLocal 100-kb clustering proxy results.`lamiales_local_cluster_proxy.tsv`	Methods	TSV	4.82 KB	`3664d4824fb2bbc3e3993fd548de107ad2860c34f9bafe41f3dd709691330b7f`
PlantSME five-pathway candidatesFull PlantSME pass-level candidate table with protein-source provenance.`plantsme_five_pathway_candidates_20260820.tsv`	Candidates	TSV	99.4 MB	`68988c1f95894f1c5f32f7361d7ad2f3ce62ac4c9043bf9f758de7689b8a3966`
PlantSME five-pathway family countsSpecies × family assignment counts for the five PlantSME-identified pathways.`plantsme_five_pathway_family_counts_20260820.tsv`	Families	TSV	549.0 KB	`56cd712e9f31becaf9e06031c4bc53cd19299ff63a974cd8c87fab97904e92eb`

Generated public exports

UI-ready summaries

These CSV files are generated from the current pathway portal at request time.

CSV

Enriched family summary

UI-ready family summary generated from the current portal.

Download

CSV

Public pathway species summary

Public species profiles and pathway-rate summaries.

Download

CSV

Candidate record export

All public candidate records in tabular form.

Download

Data interpretation travels with the files

Use the evidence and methods page to interpret stable locus, reference-only, ND and unavailable states. Candidate records are computational and no public protein sequences are bundled.