Clerodendrum trichotomum chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_057680.1 · 13–86 bp · −
psbA · NC_057680.1 · 401–1,459 bp · −
trnK-UUU · NC_057680.1 · 1,675–4,259 bp · −
matK · NC_057680.1 · 1,983–3,518 bp · −
rps16 · NC_057680.1 · 4,888–6,055 bp · −
trnQ-UUG · NC_057680.1 · 7,241–7,312 bp · −
atpA · NC_057680.1 · 10,358–11,881 bp · −
atpF · NC_057680.1 · 11,986–13,213 bp · −
atpH · NC_057680.1 · 13,592–13,837 bp · −
atpI · NC_057680.1 · 14,864–15,607 bp · −
rps2 · NC_057680.1 · 15,773–16,483 bp · −
rpoC2 · NC_057680.1 · 16,676–20,860 bp · −
rpoC1 · NC_057680.1 · 21,027–23,847 bp · −
rpoB · NC_057680.1 · 23,874–27,086 bp · −
psbM · NC_057680.1 · 29,832–29,936 bp · −
trnD-GUC · NC_057680.1 · 30,458–30,531 bp · −
trnY-GUA · NC_057680.1 · 30,649–30,732 bp · −
trnE-UUC · NC_057680.1 · 30,799–30,871 bp · −
trnS-UGA · NC_057680.1 · 35,349–35,441 bp · −
trnM-CAU · NC_057680.1 · 36,427–36,500 bp · −
rps14 · NC_057680.1 · 36,645–36,947 bp · −
psaB · NC_057680.1 · 37,070–39,274 bp · −
psaA · NC_057680.1 · 39,300–41,552 bp · −
ycf3 · NC_057680.1 · 42,248–44,184 bp · −
rps4 · NC_057680.1 · 45,252–45,857 bp · −
trnT-UGU · NC_057680.1 · 46,229–46,301 bp · −
ndhJ · NC_057680.1 · 48,532–49,008 bp · −
ndhK · NC_057680.1 · 49,109–49,786 bp · −
ndhC · NC_057680.1 · 49,842–50,204 bp · −
trnV · NC_057680.1 · 51,042–51,705 bp · −
atpE · NC_057680.1 · 52,175–52,576 bp · −
atpB · NC_057680.1 · 52,573–54,069 bp · −
psbJ · NC_057680.1 · 63,583–63,705 bp · −
psbL · NC_057680.1 · 63,839–63,955 bp · −
psbF · NC_057680.1 · 63,979–64,098 bp · −
psbE · NC_057680.1 · 64,113–64,364 bp · −
trnW-CCA · NC_057680.1 · 65,792–65,865 bp · −
trnP-UGG · NC_057680.1 · 66,028–66,101 bp · −
rpl20 · NC_057680.1 · 67,735–68,142 bp · −
rps12 · NC_057680.1 · 68,974–69,087 bp · −
rps12 · NC_057680.1 · 96,340–97,136 bp · −
clpP · NC_057680.1 · 69,227–71,174 bp · −
psbN · NC_057680.1 · 73,458–73,589 bp · −
rpoA · NC_057680.1 · 77,003–78,016 bp · −
rps11 · NC_057680.1 · 78,098–78,514 bp · −
rpl36 · NC_057680.1 · 78,616–78,729 bp · −
infA · NC_057680.1 · 78,825–79,058 bp · −
rps8 · NC_057680.1 · 79,184–79,588 bp · −
rpl14 · NC_057680.1 · 79,749–80,117 bp · −
rpl16 · NC_057680.1 · 80,234–81,488 bp · −
rps3 · NC_057680.1 · 81,648–82,304 bp · −
rpl22 · NC_057680.1 · 82,289–82,756 bp · −
rps19 · NC_057680.1 · 82,812–83,090 bp · −
rpl2 · NC_057680.1 · 83,144–84,635 bp · −
rpl23 · NC_057680.1 · 84,654–84,935 bp · −
trnI-CAU · NC_057680.1 · 85,101–85,174 bp · −
trnL-CAA · NC_057680.1 · 92,703–92,783 bp · −
ndhB · NC_057680.1 · 93,333–95,544 bp · −
rps7 · NC_057680.1 · 95,819–96,286 bp · −
trnN-GUU · NC_057680.1 · 107,184–107,255 bp · −
ndhF · NC_057680.1 · 108,700–110,925 bp · −
ndhD · NC_057680.1 · 113,500–115,029 bp · −
psaC · NC_057680.1 · 115,130–115,375 bp · −
ndhE · NC_057680.1 · 115,626–115,931 bp · −
ndhG · NC_057680.1 · 116,142–116,672 bp · −
ndhI · NC_057680.1 · 117,024–117,530 bp · −
ndhA · NC_057680.1 · 117,611–119,615 bp · −
ndhH · NC_057680.1 · 119,617–120,798 bp · −
rps15 · NC_057680.1 · 120,895–121,167 bp · −
ycf1 · NC_057680.1 · 121,532–127,021 bp · −
trnR-ACG · NC_057680.1 · 127,995–128,068 bp · −
rrn5S · NC_057680.1 · 128,310–128,430 bp · −
rrn4.5S · NC_057680.1 · 128,682–128,784 bp · −
K8L63_pgr002 · NC_057680.1 · 128,883–131,692 bp · −
trnA · NC_057680.1 · 131,854–132,734 bp · −
trnI · NC_057680.1 · 132,798–133,819 bp · −
K8L63_pgr001 · NC_057680.1 · 134,117–135,607 bp · −
trnV-GAC · NC_057680.1 · 135,835–135,906 bp · −
ycf2 · NC_057680.1 · 142,519–149,352 bp · −
psbK · NC_057680.1 · 7,676–7,861 bp · +
psbI · NC_057680.1 · 8,271–8,381 bp · +
trnS · NC_057680.1 · 8,498–8,585 bp · +
trnG-UCC · NC_057680.1 · 9,231–9,997 bp · +
trnR-UCU · NC_057680.1 · 10,182–10,253 bp · +
trnC-GCA · NC_057680.1 · 28,299–28,369 bp · +
petN · NC_057680.1 · 28,954–29,043 bp · +
trnT-GGU · NC_057680.1 · 31,426–31,497 bp · +
psbD · NC_057680.1 · 32,658–33,719 bp · +
psbC · NC_057680.1 · 33,667–35,088 bp · +
psbZ · NC_057680.1 · 35,768–35,956 bp · +
trnG-GCC · NC_057680.1 · 36,175–36,245 bp · +
trnS-GGA · NC_057680.1 · 44,859–44,945 bp · +
trnL · NC_057680.1 · 46,974–47,543 bp · +
trnF · NC_057680.1 · 48,093–48,174 bp · +
trnM-CAU · NC_057680.1 · 51,886–51,958 bp · +
rbcL · NC_057680.1 · 54,859–56,298 bp · +
accD · NC_057680.1 · 57,006–58,487 bp · +
psaI · NC_057680.1 · 59,093–59,203 bp · +
ycf4 · NC_057680.1 · 59,625–60,179 bp · +
cemA · NC_057680.1 · 60,836–61,525 bp · +
petA · NC_057680.1 · 61,720–62,682 bp · +
petL · NC_057680.1 · 65,278–65,373 bp · +
petG · NC_057680.1 · 65,556–65,669 bp · +
psaJ · NC_057680.1 · 66,389–66,523 bp · +
rpl33 · NC_057680.1 · 66,994–67,194 bp · +
rps18 · NC_057680.1 · 67,361–67,666 bp · +
rps12 · NC_057680.1 · 137,479–138,275 bp · +
psbB · NC_057680.1 · 71,586–73,112 bp · +
psbT · NC_057680.1 · 73,290–73,397 bp · +
psbH · NC_057680.1 · 73,695–73,916 bp · +
petB · NC_057680.1 · 74,038–75,414 bp · +
petD · NC_057680.1 · 75,603–76,820 bp · +
ycf2 · NC_057680.1 · 85,263–92,096 bp · +
trnV-GAC · NC_057680.1 · 98,709–98,780 bp · +
rrn16S · NC_057680.1 · 99,008–100,498 bp · +
trnI · NC_057680.1 · 100,796–101,817 bp · +
trnA · NC_057680.1 · 101,882–102,761 bp · +
rrn23S · NC_057680.1 · 102,923–105,732 bp · +
rrn4.5S · NC_057680.1 · 105,831–105,933 bp · +
rrn5S · NC_057680.1 · 106,185–106,305 bp · +
trnR-ACG · NC_057680.1 · 106,547–106,620 bp · +
ycf1 · NC_057680.1 · 107,594–108,703 bp · +
rpl32 · NC_057680.1 · 111,469–111,645 bp · +
trnL-UAG · NC_057680.1 · 112,105–112,184 bp · +
ccsA · NC_057680.1 · 112,290–113,255 bp · +
trnN-GUU · NC_057680.1 · 127,360–127,431 bp · +
rps7 · NC_057680.1 · 138,329–138,796 bp · +
ndhB · NC_057680.1 · 139,071–141,282 bp · +
trnL-CAA · NC_057680.1 · 141,832–141,912 bp · +
trnI-CAU · NC_057680.1 · 149,441–149,514 bp · +
rpl23 · NC_057680.1 · 149,680–149,961 bp · +
rpl2 · NC_057680.1 · 149,980–151,471 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clerodendrum trichotomum
ANNOTATED PLASTOME
NC_057680.1
151,549 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37887 75774 113662 151549 bp
Forward strand 5′ → 3′
psbK psbI trnS trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL trnF trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16S trnI trnA rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S K8L63_pgr002 trnA trnI K8L63_pgr001 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 13 86 74 Locate
psbA gene − 401 1459 1059 Locate
trnK-UUU gene − 1675 4259 2585 Locate
matK gene − 1983 3518 1536 Locate
rps16 gene − 4888 6055 1168 Locate
trnQ-UUG gene − 7241 7312 72 Locate
psbK gene + 7676 7861 186 Locate
psbI gene + 8271 8381 111 Locate
trnS gene + 8498 8585 88 Locate
trnG-UCC gene + 9231 9997 767 Locate
trnR-UCU gene + 10182 10253 72 Locate
atpA gene − 10358 11881 1524 Locate
atpF gene − 11986 13213 1228 Locate
atpH gene − 13592 13837 246 Locate
atpI gene − 14864 15607 744 Locate
rps2 gene − 15773 16483 711 Locate
rpoC2 gene − 16676 20860 4185 Locate
rpoC1 gene − 21027 23847 2821 Locate
rpoB gene − 23874 27086 3213 Locate
trnC-GCA gene + 28299 28369 71 Locate
petN gene + 28954 29043 90 Locate
psbM gene − 29832 29936 105 Locate
trnD-GUC gene − 30458 30531 74 Locate
trnY-GUA gene − 30649 30732 84 Locate
trnE-UUC gene − 30799 30871 73 Locate
trnT-GGU gene + 31426 31497 72 Locate
psbD gene + 32658 33719 1062 Locate
psbC gene + 33667 35088 1422 Locate
trnS-UGA gene − 35349 35441 93 Locate
psbZ gene + 35768 35956 189 Locate
trnG-GCC gene + 36175 36245 71 Locate
trnM-CAU gene − 36427 36500 74 Locate
rps14 gene − 36645 36947 303 Locate
psaB gene − 37070 39274 2205 Locate
psaA gene − 39300 41552 2253 Locate
ycf3 gene − 42248 44184 1937 Locate
trnS-GGA gene + 44859 44945 87 Locate
rps4 gene − 45252 45857 606 Locate
trnT-UGU gene − 46229 46301 73 Locate
trnL gene + 46974 47543 570 Locate
trnF gene + 48093 48174 82 Locate
ndhJ gene − 48532 49008 477 Locate
ndhK gene − 49109 49786 678 Locate
ndhC gene − 49842 50204 363 Locate
trnV gene − 51042 51705 664 Locate
trnM-CAU gene + 51886 51958 73 Locate
atpE gene − 52175 52576 402 Locate
atpB gene − 52573 54069 1497 Locate
rbcL gene + 54859 56298 1440 Locate
accD gene + 57006 58487 1482 Locate
psaI gene + 59093 59203 111 Locate
ycf4 gene + 59625 60179 555 Locate
cemA gene + 60836 61525 690 Locate
petA gene + 61720 62682 963 Locate
psbJ gene − 63583 63705 123 Locate
psbL gene − 63839 63955 117 Locate
psbF gene − 63979 64098 120 Locate
psbE gene − 64113 64364 252 Locate
petL gene + 65278 65373 96 Locate
petG gene + 65556 65669 114 Locate
trnW-CCA gene − 65792 65865 74 Locate
trnP-UGG gene − 66028 66101 74 Locate
psaJ gene + 66389 66523 135 Locate
rpl33 gene + 66994 67194 201 Locate
rps18 gene + 67361 67666 306 Locate
rpl20 gene − 67735 68142 408 Locate
rps12 gene − 68974 69087 114 Locate
clpP gene − 69227 71174 1948 Locate
psbB gene + 71586 73112 1527 Locate
psbT gene + 73290 73397 108 Locate
psbN gene − 73458 73589 132 Locate
psbH gene + 73695 73916 222 Locate
petB gene + 74038 75414 1377 Locate
petD gene + 75603 76820 1218 Locate
rpoA gene − 77003 78016 1014 Locate
rps11 gene − 78098 78514 417 Locate
rpl36 gene − 78616 78729 114 Locate
infA gene − 78825 79058 234 Locate
rps8 gene − 79184 79588 405 Locate
rpl14 gene − 79749 80117 369 Locate
rpl16 gene − 80234 81488 1255 Locate
rps3 gene − 81648 82304 657 Locate
rpl22 gene − 82289 82756 468 Locate
rps19 gene − 82812 83090 279 Locate
rpl2 gene − 83144 84635 1492 Locate
rpl23 gene − 84654 84935 282 Locate
trnI-CAU gene − 85101 85174 74 Locate
ycf2 gene + 85263 92096 6834 Locate
trnL-CAA gene − 92703 92783 81 Locate
ndhB gene − 93333 95544 2212 Locate
rps7 gene − 95819 96286 468 Locate
rps12 gene − 96340 97136 797 Locate
trnV-GAC gene + 98709 98780 72 Locate
rrn16S gene + 99008 100498 1491 Locate
trnI gene + 100796 101817 1022 Locate
trnA gene + 101882 102761 880 Locate
rrn23S gene + 102923 105732 2810 Locate
rrn4.5S gene + 105831 105933 103 Locate
rrn5S gene + 106185 106305 121 Locate
trnR-ACG gene + 106547 106620 74 Locate
trnN-GUU gene − 107184 107255 72 Locate
ycf1 gene + 107594 108703 1110 Locate
ndhF gene − 108700 110925 2226 Locate
rpl32 gene + 111469 111645 177 Locate
trnL-UAG gene + 112105 112184 80 Locate
ccsA gene + 112290 113255 966 Locate
ndhD gene − 113500 115029 1530 Locate
psaC gene − 115130 115375 246 Locate
ndhE gene − 115626 115931 306 Locate
ndhG gene − 116142 116672 531 Locate
ndhI gene − 117024 117530 507 Locate
ndhA gene − 117611 119615 2005 Locate
ndhH gene − 119617 120798 1182 Locate
rps15 gene − 120895 121167 273 Locate
ycf1 gene − 121532 127021 5490 Locate
trnN-GUU gene + 127360 127431 72 Locate
trnR-ACG gene − 127995 128068 74 Locate
rrn5S gene − 128310 128430 121 Locate
rrn4.5S gene − 128682 128784 103 Locate
K8L63_pgr002 gene − 128883 131692 2810 Locate
trnA gene − 131854 132734 881 Locate
trnI gene − 132798 133819 1022 Locate
K8L63_pgr001 gene − 134117 135607 1491 Locate
trnV-GAC gene − 135835 135906 72 Locate
rps12 gene + 137479 138275 797 Locate
rps7 gene + 138329 138796 468 Locate
ndhB gene + 139071 141282 2212 Locate
trnL-CAA gene + 141832 141912 81 Locate
ycf2 gene − 142519 149352 6834 Locate
trnI-CAU gene + 149441 149514 74 Locate
rpl23 gene + 149680 149961 282 Locate
rpl2 gene + 149980 151471 1492 Locate
Status Available
Accession NC_057680.1
Length 151,549 bp
GC content 38.2%
Annotated genes 131
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 6
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources