Isodon serra chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_064127.1 · 11–84 bp · −
psbA · NC_064127.1 · 317–1,375 bp · −
trnK-UUU · NC_064127.1 · 1,612–4,189 bp · −
matK · NC_064127.1 · 1,933–3,453 bp · −
rps16 · NC_064127.1 · 4,726–5,867 bp · −
trnQ-UUG · NC_064127.1 · 6,724–6,795 bp · −
trnS-GCU · NC_064127.1 · 8,012–8,099 bp · −
atpA · NC_064127.1 · 9,892–11,415 bp · −
atpF · NC_064127.1 · 11,516–12,762 bp · −
atpH · NC_064127.1 · 13,054–13,299 bp · −
atpI · NC_064127.1 · 14,238–14,981 bp · −
rps2 · NC_064127.1 · 15,207–15,917 bp · −
rpoC2 · NC_064127.1 · 16,132–20,307 bp · −
rpoC1 · NC_064127.1 · 20,484–23,317 bp · −
rpoB · NC_064127.1 · 23,344–26,556 bp · −
psbM · NC_064127.1 · 29,080–29,184 bp · −
trnD-GUC · NC_064127.1 · 29,703–29,776 bp · −
trnY-GUA · NC_064127.1 · 29,887–29,970 bp · −
trnE-UUC · NC_064127.1 · 30,048–30,120 bp · −
trnS-UGA · NC_064127.1 · 34,806–34,898 bp · −
trnM-CAU · NC_064127.1 · 35,908–35,981 bp · −
rps14 · NC_064127.1 · 36,126–36,428 bp · −
psaB · NC_064127.1 · 36,551–38,755 bp · −
psaA · NC_064127.1 · 38,781–41,033 bp · −
ycf3 · NC_064127.1 · 41,832–43,792 bp · −
rps4 · NC_064127.1 · 45,020–45,625 bp · −
trnT-UGU · NC_064127.1 · 46,039–46,111 bp · −
ndhJ · NC_064127.1 · 48,398–48,874 bp · −
ndhK · NC_064127.1 · 48,985–49,662 bp · −
ndhC · NC_064127.1 · 49,714–50,076 bp · −
atpE · NC_064127.1 · 52,147–52,548 bp · −
atpB · NC_064127.1 · 52,545–54,041 bp · −
psbJ · NC_064127.1 · 63,716–63,838 bp · −
psbL · NC_064127.1 · 63,973–64,089 bp · −
psbF · NC_064127.1 · 64,113–64,232 bp · −
psbE · NC_064127.1 · 64,247–64,498 bp · −
trnW-CCA · NC_064127.1 · 65,898–65,971 bp · −
trnP-UGG · NC_064127.1 · 66,141–66,214 bp · −
rpl20 · NC_064127.1 · 67,987–68,373 bp · −
rps12 · NC_064127.1 · 69,106–69,219 bp · −
rps12 · NC_064127.1 · 97,038–97,280 bp · −
clpP · NC_064127.1 · 69,338–71,266 bp · −
psbN · NC_064127.1 · 73,618–73,749 bp · −
rpoA · NC_064127.1 · 77,124–78,131 bp · −
rps11 · NC_064127.1 · 78,203–78,619 bp · −
rpl36 · NC_064127.1 · 78,729–78,842 bp · −
infA · NC_064127.1 · 78,938–79,171 bp · −
rps8 · NC_064127.1 · 79,297–79,701 bp · −
rpl14 · NC_064127.1 · 79,873–80,241 bp · −
rpl16 · NC_064127.1 · 80,379–81,646 bp · −
rps3 · NC_064127.1 · 81,799–82,461 bp · −
rpl22 · NC_064127.1 · 82,446–82,919 bp · −
rps19 · NC_064127.1 · 82,984–83,262 bp · −
rpl2 · NC_064127.1 · 83,330–84,808 bp · −
rpl23 · NC_064127.1 · 84,827–85,108 bp · −
trnM-CAU · NC_064127.1 · 85,274–85,347 bp · −
trnL-CAA · NC_064127.1 · 92,845–92,925 bp · −
ndhB · NC_064127.1 · 93,488–95,695 bp · −
rps7 · NC_064127.1 · 95,966–96,433 bp · −
rrn4.5S · NC_064127.1 · 106,073–106,337 bp · −
trnN-GUU · NC_064127.1 · 107,441–107,512 bp · −
ndhF · NC_064127.1 · 108,877–111,108 bp · −
ndhD · NC_064127.1 · 113,883–115,382 bp · −
psaC · NC_064127.1 · 115,503–115,748 bp · −
ndhE · NC_064127.1 · 116,004–116,309 bp · −
ndhG · NC_064127.1 · 116,524–117,054 bp · −
ndhI · NC_064127.1 · 117,423–117,929 bp · −
ndhA · NC_064127.1 · 118,010–120,119 bp · −
ndhH · NC_064127.1 · 120,121–121,302 bp · −
rps15 · NC_064127.1 · 121,417–121,680 bp · −
ycf1 · NC_064127.1 · 122,121–127,679 bp · −
trnR-ACG · NC_064127.1 · 128,664–128,737 bp · −
rrn5S · NC_064127.1 · 128,971–129,101 bp · −
rrn23S · NC_064127.1 · 129,558–132,368 bp · −
trnA-UGC · NC_064127.1 · 132,532–133,410 bp · −
trnI · NC_064127.1 · 133,475–134,493 bp · −
rrn16S · NC_064127.1 · 134,791–136,281 bp · −
trnV-GAC · NC_064127.1 · 136,508–136,579 bp · −
ycf2 · NC_064127.1 · 143,287–150,090 bp · −
psbK · NC_064127.1 · 7,190–7,375 bp · +
psbI · NC_064127.1 · 7,766–7,876 bp · +
trnT-CGU · NC_064127.1 · 8,766–9,526 bp · +
trnR-UCU · NC_064127.1 · 9,716–9,787 bp · +
trnC-GCA · NC_064127.1 · 27,748–27,818 bp · +
petN · NC_064127.1 · 27,981–28,070 bp · +
trnT-GGU · NC_064127.1 · 30,696–30,767 bp · +
psbD · NC_064127.1 · 32,140–33,201 bp · +
psbC · NC_064127.1 · 33,149–34,570 bp · +
psbZ · NC_064127.1 · 35,239–35,427 bp · +
trnG-GCC · NC_064127.1 · 35,665–35,735 bp · +
trnS-GGA · NC_064127.1 · 44,637–44,723 bp · +
trnL-UAA · NC_064127.1 · 46,805–47,348 bp · +
trnF-GAA · NC_064127.1 · 47,648–47,720 bp · +
trnM-CAU · NC_064127.1 · 51,869–51,941 bp · +
rbcL · NC_064127.1 · 54,840–56,285 bp · +
accD · NC_064127.1 · 56,899–58,449 bp · +
psaI · NC_064127.1 · 59,147–59,257 bp · +
ycf4 · NC_064127.1 · 59,702–60,256 bp · +
cemA · NC_064127.1 · 60,842–61,531 bp · +
petA · NC_064127.1 · 61,746–62,708 bp · +
petL · NC_064127.1 · 65,392–65,487 bp · +
petG · NC_064127.1 · 65,662–65,775 bp · +
psaJ · NC_064127.1 · 66,498–66,632 bp · +
rpl33 · NC_064127.1 · 67,080–67,280 bp · +
rps18 · NC_064127.1 · 67,447–67,752 bp · +
rps12 · NC_064127.1 · 138,252–138,494 bp · +
psbB · NC_064127.1 · 71,739–73,265 bp · +
psbT · NC_064127.1 · 73,451–73,552 bp · +
psbH · NC_064127.1 · 73,855–74,073 bp · +
petB · NC_064127.1 · 74,208–75,565 bp · +
petD · NC_064127.1 · 76,423–76,947 bp · +
ycf2 · NC_064127.1 · 85,442–92,245 bp · +
trnV-GAC · NC_064127.1 · 98,953–99,024 bp · +
rrn16S · NC_064127.1 · 99,251–100,741 bp · +
trnI · NC_064127.1 · 101,039–102,057 bp · +
trnA-UGC · NC_064127.1 · 102,122–103,000 bp · +
rrn23S · NC_064127.1 · 103,164–105,974 bp · +
rrn5S · NC_064127.1 · 106,431–106,561 bp · +
trnR-ACG · NC_064127.1 · 106,795–106,868 bp · +
trnL-UAG · NC_064127.1 · 112,521–112,600 bp · +
ccsA · NC_064127.1 · 112,688–113,659 bp · +
trnN-GUU · NC_064127.1 · 128,020–128,091 bp · +
rrn4.5S · NC_064127.1 · 129,195–129,459 bp · +
rps7 · NC_064127.1 · 139,099–139,566 bp · +
ndhB · NC_064127.1 · 139,837–142,044 bp · +
trnL-CAA · NC_064127.1 · 142,607–142,687 bp · +
trnM-CAU · NC_064127.1 · 150,185–150,258 bp · +
rpl23 · NC_064127.1 · 150,424–150,705 bp · +
rpl2 · NC_064127.1 · 150,724–152,202 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon serra
ANNOTATED PLASTOME
NC_064127.1
152,312 bp · 128 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38078 76156 114234 152312 bp
Forward strand 5′ → 3′
psbK psbI trnT-CGU trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16S trnI trnA-UGC rrn23S rrn5S trnR-ACG trnL-UAG ccsA trnN-GUU rrn4.5S rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 rrn4.5S trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn23S trnA-UGC trnI rrn16S trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
129 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 317 1375 1059 Locate
trnK-UUU gene − 1612 4189 2578 Locate
matK gene − 1933 3453 1521 Locate
rps16 gene − 4726 5867 1142 Locate
trnQ-UUG gene − 6724 6795 72 Locate
psbK gene + 7190 7375 186 Locate
psbI gene + 7766 7876 111 Locate
trnS-GCU gene − 8012 8099 88 Locate
trnT-CGU gene + 8766 9526 761 Locate
trnR-UCU gene + 9716 9787 72 Locate
atpA gene − 9892 11415 1524 Locate
atpF gene − 11516 12762 1247 Locate
atpH gene − 13054 13299 246 Locate
atpI gene − 14238 14981 744 Locate
rps2 gene − 15207 15917 711 Locate
rpoC2 gene − 16132 20307 4176 Locate
rpoC1 gene − 20484 23317 2834 Locate
rpoB gene − 23344 26556 3213 Locate
trnC-GCA gene + 27748 27818 71 Locate
petN gene + 27981 28070 90 Locate
psbM gene − 29080 29184 105 Locate
trnD-GUC gene − 29703 29776 74 Locate
trnY-GUA gene − 29887 29970 84 Locate
trnE-UUC gene − 30048 30120 73 Locate
trnT-GGU gene + 30696 30767 72 Locate
psbD gene + 32140 33201 1062 Locate
psbC gene + 33149 34570 1422 Locate
trnS-UGA gene − 34806 34898 93 Locate
psbZ gene + 35239 35427 189 Locate
trnG-GCC gene + 35665 35735 71 Locate
trnM-CAU gene − 35908 35981 74 Locate
rps14 gene − 36126 36428 303 Locate
psaB gene − 36551 38755 2205 Locate
psaA gene − 38781 41033 2253 Locate
ycf3 gene − 41832 43792 1961 Locate
trnS-GGA gene + 44637 44723 87 Locate
rps4 gene − 45020 45625 606 Locate
trnT-UGU gene − 46039 46111 73 Locate
trnL-UAA gene + 46805 47348 544 Locate
trnF-GAA gene + 47648 47720 73 Locate
ndhJ gene − 48398 48874 477 Locate
ndhK gene − 48985 49662 678 Locate
ndhC gene − 49714 50076 363 Locate
trnM-CAU gene + 51869 51941 73 Locate
atpE gene − 52147 52548 402 Locate
atpB gene − 52545 54041 1497 Locate
rbcL gene + 54840 56285 1446 Locate
accD gene + 56899 58449 1551 Locate
psaI gene + 59147 59257 111 Locate
ycf4 gene + 59702 60256 555 Locate
cemA gene + 60842 61531 690 Locate
petA gene + 61746 62708 963 Locate
psbJ gene − 63716 63838 123 Locate
psbL gene − 63973 64089 117 Locate
psbF gene − 64113 64232 120 Locate
psbE gene − 64247 64498 252 Locate
petL gene + 65392 65487 96 Locate
petG gene + 65662 65775 114 Locate
trnW-CCA gene − 65898 65971 74 Locate
trnP-UGG gene − 66141 66214 74 Locate
psaJ gene + 66498 66632 135 Locate
rpl33 gene + 67080 67280 201 Locate
rps18 gene + 67447 67752 306 Locate
rpl20 gene − 67987 68373 387 Locate
rps12 gene − 69106 69219 114 Locate
clpP gene − 69338 71266 1929 Locate
psbB gene + 71739 73265 1527 Locate
psbT gene + 73451 73552 102 Locate
psbN gene − 73618 73749 132 Locate
psbH gene + 73855 74073 219 Locate
petB gene + 74208 75565 1358 Locate
petD gene + 76423 76947 525 Locate
rpoA gene − 77124 78131 1008 Locate
rps11 gene − 78203 78619 417 Locate
rpl36 gene − 78729 78842 114 Locate
infA gene − 78938 79171 234 Locate
rps8 gene − 79297 79701 405 Locate
rpl14 gene − 79873 80241 369 Locate
rpl16 gene − 80379 81646 1268 Locate
rps3 gene − 81799 82461 663 Locate
rpl22 gene − 82446 82919 474 Locate
rps19 gene − 82984 83262 279 Locate
rpl2 gene − 83330 84808 1479 Locate
rpl23 gene − 84827 85108 282 Locate
trnM-CAU gene − 85274 85347 74 Locate
ycf2 gene + 85442 92245 6804 Locate
trnL-CAA gene − 92845 92925 81 Locate
ndhB gene − 93488 95695 2208 Locate
rps7 gene − 95966 96433 468 Locate
rps12 gene − 97038 97280 243 Locate
trnV-GAC gene + 98953 99024 72 Locate
rrn16S gene + 99251 100741 1491 Locate
trnI gene + 101039 102057 1019 Locate
trnA-UGC gene + 102122 103000 879 Locate
rrn23S gene + 103164 105974 2811 Locate
rrn4.5S gene − 106073 106337 265 Locate
rrn5S gene + 106431 106561 131 Locate
trnR-ACG gene + 106795 106868 74 Locate
trnN-GUU gene − 107441 107512 72 Locate
ndhF gene − 108877 111108 2232 Locate
trnL-UAG gene + 112521 112600 80 Locate
ccsA gene + 112688 113659 972 Locate
ndhD gene − 113883 115382 1500 Locate
psaC gene − 115503 115748 246 Locate
ndhE gene − 116004 116309 306 Locate
ndhG gene − 116524 117054 531 Locate
ndhI gene − 117423 117929 507 Locate
ndhA gene − 118010 120119 2110 Locate
ndhH gene − 120121 121302 1182 Locate
rps15 gene − 121417 121680 264 Locate
ycf1 gene − 122121 127679 5559 Locate
trnN-GUU gene + 128020 128091 72 Locate
trnR-ACG gene − 128664 128737 74 Locate
rrn5S gene − 128971 129101 131 Locate
rrn4.5S gene + 129195 129459 265 Locate
rrn23S gene − 129558 132368 2811 Locate
trnA-UGC gene − 132532 133410 879 Locate
trnI gene − 133475 134493 1019 Locate
rrn16S gene − 134791 136281 1491 Locate
trnV-GAC gene − 136508 136579 72 Locate
rps12 gene + 138252 138494 243 Locate
rps7 gene + 139099 139566 468 Locate
ndhB gene + 139837 142044 2208 Locate
trnL-CAA gene + 142607 142687 81 Locate
ycf2 gene − 143287 150090 6804 Locate
trnM-CAU gene + 150185 150258 74 Locate
rpl23 gene + 150424 150705 282 Locate
rpl2 gene + 150724 152202 1479 Locate
Status Available
Accession NC_064127.1
Length 152,312 bp
GC content 37.6%
Annotated genes 128
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 12 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources