Pathway-family scientific record
CYP80F1
CYP80F1 enzyme-family module
This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.
Stable locus
plantsmeAlkaloid-related biosynthesis
- Public candidate IDs
- 15
- Species with candidates
- 14
- Species with assignments
- 14
- Source assignments
- 15
- Gene-tree candidates
- 0
- Motif candidates
- 0
Evidence profile
Available evidence layers
◆Candidate identifiers15 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.
Comparative signature
Lamiaceae comparison fields
- Rate delta
- Not calculated
- Prevalence delta
- Not calculated
- Comparable source
- PlantSME family assignments
- Comparable source count
- 15
- Public candidate count
- 15
- Evidence mode
- plantsme
Species coverage
Assignment and locus coverage by species
Source family counts and public candidate identifiers are shown in separate columns.
| Species | Evidence state | Source count | Candidate IDs | Expression | |
|---|---|---|---|---|---|
| Cornutia pyramidataPremnoideae · Cornutia | Stable locus | 2 | 2 | No matrix | |
| Agastache rugosaNepetoideae · Agastache | Stable locus | 1 | 1 | No matrix | |
| Leonurus cardiacaLamioideae · Leonurus | Stable locus | 1 | 1 | No matrix | |
| Lycopus americanusNepetoideae · Lycopus | Stable locus | 1 | 1 | No matrix | |
| Marrubium vulgareLamioideae · Marrubium | Stable locus | 1 | 1 | No matrix | |
| Melissa officinalisNepetoideae · Melissa | Stable locus | 1 | 1 | No matrix | |
| Mentha x piperitaNepetoideae · Mentha | Stable locus | 1 | 1 | No matrix | |
| Monarda didymaNepetoideae · Monarda | Stable locus | 1 | 1 | No matrix | |
| Ocimum basilicumNepetoideae · Ocimum | Stable locus | 1 | 1 | Available | |
| Origanum majoranaNepetoideae · Origanum | Stable locus | 1 | 1 | No matrix | |
| Premna microphyllaPremnoideae · Premna | Stable locus | 1 | 1 | No matrix | |
| Rotheca myricoidesAjugoideae · Rotheca | Stable locus | 1 | 1 | No matrix | |
| Stachys officinalisLamioideae · Stachys | Stable locus | 1 | 1 | No matrix | |
| Vitex agnus-castusViticoideae · Vitex | Stable locus | 1 | 1 | No matrix |
Candidate records
Traceable candidate identifiers
Filter and inspect candidate identifiers for this family.
| Candidate ID | Species | Pathway / family | Evidence | Confidence | Identity | HMM score | |
|---|---|---|---|---|---|---|---|
| Ocimum basilicum | Alkaloid · CYP80F1 | blast+hmm | Medium | 65.5% | 17.9 | ||
| Stachys officinalis | Alkaloid · CYP80F1 | hmm | Medium | — | 27.3 | ||
| Cornutia pyramidata | Alkaloid · CYP80F1 | hmm | Medium | — | 26.4 | ||
| Rotheca myricoides | Alkaloid · CYP80F1 | hmm | Medium | — | 25.4 | ||
| Monarda didyma | Alkaloid · CYP80F1 | hmm | Medium | — | 25.0 | ||
| Mentha x piperita | Alkaloid · CYP80F1 | hmm | Medium | — | 24.8 | ||
| Lycopus americanus | Alkaloid · CYP80F1 | hmm | Medium | — | 22.7 | ||
| Leonurus cardiaca | Alkaloid · CYP80F1 | hmm | Medium | — | 19.7 | ||
| Vitex agnus-castus | Alkaloid · CYP80F1 | hmm | Medium | — | 19.2 | ||
| Agastache rugosa | Alkaloid · CYP80F1 | hmm | Medium | — | 18.6 | ||
| Premna microphylla | Alkaloid · CYP80F1 | hmm | Medium | — | 18.1 | ||
| Origanum majorana | Alkaloid · CYP80F1 | hmm | Medium | — | 16.7 | ||
| Cornutia pyramidata | Alkaloid · CYP80F1 | hmm | Medium | — | 16.5 | ||
| Marrubium vulgare | Alkaloid · CYP80F1 | hmm | Medium | — | 15.8 | ||
| Melissa officinalis | Alkaloid · CYP80F1 | hmm | Medium | — | 15.8 |