Pathway-family scientific record
H6H
H6H enzyme-family module
This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.
Stable locus
plantsmeAlkaloid-related biosynthesis
- Public candidate IDs
- 7
- Species with candidates
- 6
- Species with assignments
- 6
- Source assignments
- 7
- Gene-tree candidates
- 0
- Motif candidates
- 0
Evidence profile
Available evidence layers
◆Candidate identifiers7 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.
Comparative signature
Lamiaceae comparison fields
- Rate delta
- Not calculated
- Prevalence delta
- Not calculated
- Comparable source
- PlantSME family assignments
- Comparable source count
- 7
- Public candidate count
- 7
- Evidence mode
- plantsme
Species coverage
Assignment and locus coverage by species
Source family counts and public candidate identifiers are shown in separate columns.
| Species | Evidence state | Source count | Candidate IDs | Expression | |
|---|---|---|---|---|---|
| Clinopodium barosmumNepetoideae · Clinopodium | Stable locus | 2 | 2 | No matrix | |
| Dracocephalum rupestreNepetoideae · Dracocephalum | Stable locus | 1 | 1 | No matrix | |
| Origanum majoranaNepetoideae · Origanum | Stable locus | 1 | 1 | No matrix | |
| Pogostemon cablinLamioideae · Pogostemon | Stable locus | 1 | 1 | Available | |
| Teucrium chamaedrysAjugoideae · Teucrium | Stable locus | 1 | 1 | No matrix | |
| Vitex agnus-castusViticoideae · Vitex | Stable locus | 1 | 1 | No matrix |
Candidate records
Traceable candidate identifiers
Filter and inspect candidate identifiers for this family.
| Candidate ID | Species | Pathway / family | Evidence | Confidence | Identity | HMM score | |
|---|---|---|---|---|---|---|---|
| Clinopodium barosmum | Alkaloid · H6H | blast+hmm | High | 55.7% | 168.5 | ||
| Pogostemon cablin | Alkaloid · H6H | blast+hmm | High | 58.3% | 158.9 | ||
| Vitex agnus-castus | Alkaloid · H6H | blast+hmm | High | 58.8% | 60.6 | ||
| Dracocephalum rupestre | Alkaloid · H6H | blast+hmm | High | 59.7% | 36.5 | ||
| Origanum majorana | Alkaloid · H6H | blast | Medium | 54.5% | — | ||
| Teucrium chamaedrys | Alkaloid · H6H | blast | Medium | 38.8% | — | ||
| Clinopodium barosmum | Alkaloid · H6H | blast | Medium | 35.0% | — |