Pathway-family scientific record

`FNS`

FNS enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidates Compare species CSV

Stable locus plantsmeFlavonoid biosynthesis

Public candidate IDs: 68
Species with candidates: 29
Species with assignments: 29
Source assignments: 68
Gene-tree candidates: 0
Motif candidates: 0

Evidence profile

Available evidence layers

◆Candidate identifiers68 public species-linked identifiers can be inspected.

GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.

MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.

100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta: Not calculated
Prevalence delta: Not calculated
Comparable source: PlantSME family assignments
Comparable source count: 68
Public candidate count: 68
Evidence mode: plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

Species	Evidence state	Source count	Candidate IDs	Expression
Ocimum basilicumNepetoideae · Ocimum	Stable locus	9	9	Available
Pogostemon cablinLamioideae · Pogostemon	Stable locus	6	6	Available
Collinsonia canadensisNepetoideae · Collinsonia	Stable locus	5	5	No matrix
Teucrium chamaedrysAjugoideae · Teucrium	Stable locus	5	5	No matrix
Callicarpa americanaCallicarpoideae · Callicarpa	Stable locus	4	4	No matrix
Isodon lophanthoidesNepetoideae · Isodon	Stable locus	4	4	No matrix
Rotheca myricoidesAjugoideae · Rotheca	Stable locus	4	4	No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne	Stable locus	4	4	No matrix
Cornutia pyramidataPremnoideae · Cornutia	Stable locus	2	2	No matrix
Glechoma hederaceaNepetoideae · Glechoma	Stable locus	2	2	No matrix
Leonurus sibiricusLamioideae · Leonurus	Stable locus	2	2	No matrix
Nepeta catariaNepetoideae · Nepeta	Stable locus	2	2	Available
Premna microphyllaPremnoideae · Premna	Stable locus	2	2	No matrix
Stachys officinalisLamioideae · Stachys	Stable locus	2	2	No matrix
Ballota pseudodictamnusLamioideae · Ballota	Stable locus	1	1	No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa	Stable locus	1	1	No matrix
Clinopodium gracileNepetoideae · Clinopodium	Stable locus	1	1	No matrix
Congea tomentosaSymphorematoideae · Congea	Stable locus	1	1	No matrix
Glechoma longitubaNepetoideae · Glechoma	Stable locus	1	1	No matrix
Gmelina philippensisPremnoideae · Gmelina	Stable locus	1	1	No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia	Stable locus	1	1	No matrix
Isodon serraNepetoideae · Isodon	Stable locus	1	1	No matrix
Mentha spicataNepetoideae · Mentha	Stable locus	1	1	No matrix
Phlomoides rotataLamioideae · Phlomoides	Stable locus	1	1	No matrix
Prunella vulgarisNepetoideae · Prunella	Stable locus	1	1	No matrix
Salvia bowleyanaNepetoideae · Salvia	Stable locus	1	1	No matrix
Salvia officinalisNepetoideae · Salvia	Stable locus	1	1	No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria	Stable locus	1	1	No matrix
Tectona grandisTectonoideae · Tectona	Stable locus	1	1	Available

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Candidate ID	Species	Pathway / family	Evidence	Confidence	Identity	HMM score
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_43.1377.mRNA1	Stenogyne calaminthoides	Flavonoid · `FNS`	blast	Medium	36.6%	—
evm.model.chr1.2255	Prunella vulgaris	Flavonoid · `FNS`	blast	Medium	40.3%	—
evm.model.ptg000017l.1514	Isodon serra	Flavonoid · `FNS`	blast	Medium	37.4%	—
g49191.t1	Nepeta cataria	Flavonoid · `FNS`	blast	Medium	33.9%	—
ROMY_c82470_g1_i5_len_2110	Rotheca myricoides	Flavonoid · `FNS`	hmm	Medium	—	48.2
Teucrium_chamaedrys__Tcha59939	Teucrium chamaedrys	Flavonoid · `FNS`	hmm	Medium	—	29.8
Sbow06G0035310.1	Salvia bowleyana	Flavonoid · `FNS`	hmm	Medium	—	19.6
ROMY_c35224_g1_i1_len_387	Rotheca myricoides	Flavonoid · `FNS`	hmm	Medium	—	19.1
Clgra_024666-T1	Clinopodium gracile	Flavonoid · `FNS`	hmm	Medium	—	19.0
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_2.1602.mRNA1	Stenogyne calaminthoides	Flavonoid · `FNS`	hmm	Medium	—	19.0
HOSA_c2269_g1_i1_len_264	Holmskioldia sanguinea	Flavonoid · `FNS`	hmm	Medium	—	17.6
GLHE_c76200_g1_i1_len_272	Glechoma hederacea	Flavonoid · `FNS`	hmm	Medium	—	17.1
GLHE_c29839_g1_i2_len_367	Glechoma hederacea	Flavonoid · `FNS`	hmm	Medium	—	16.8
Teucrium_chamaedrys__Tcha34066	Teucrium chamaedrys	Flavonoid · `FNS`	hmm	Medium	—	16.6
MESP_c29094_g1_i1_len_415	Mentha spicata	Flavonoid · `FNS`	hmm	Medium	—	16.5
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_2.1597.mRNA1	Stenogyne calaminthoides	Flavonoid · `FNS`	hmm	Medium	—	16.5
Pat_B21G139300.m1	Pogostemon cablin	Flavonoid · `FNS`	hmm	Medium	—	15.9
Pat_A11G004000.m1	Pogostemon cablin	Flavonoid · `FNS`	hmm	Medium	—	14.6