Species pathway expression context

Salvia miltiorrhiza

Candidate-to-expression mappings are displayed independently from candidate functional evidence.

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Matrix file
Salvia_miltiorrhiza.gene_tpm_log1p.tsv
Samples
12
Matrix genes
18,549
Expressed genes
18,334
Mapped candidate rows
68
Measured / ND
38 / 30
Partial quantitative coverage

Measured and ND rows coexist. ND cells use a separate hatch pattern and remain outside the continuous legend.

Row z-score−2.50+2.5
ND · Not detected
Unmapped candidate ID
Candidateflower-1flower-2flower-3leaf-1leaf-2leaf-3root-1root-2root-3stem-1stem-2stem-3
Smil03G0033220.1.v1.484Alkaloid · TRI_TRII
Smil03G0033260.1.v1.484Alkaloid · TRI_TRII
Smil04G0006790.1.v1.484Alkaloid · TRI_TRII
Smil04G0006820.1.v1.484Alkaloid · TRI_TRII
Smil04G0007550.1.v1.484Alkaloid · TRI_TRII
Smil04G0009680.1.v1.484Alkaloid · TRI_TRII
Smil04G0010360.1.v1.484Alkaloid · TRI_TRII
Smil04G0030530.1.v1.484Alkaloid · TRI_TRII
Smil04G0030630.1.v1.484Alkaloid · TRI_TRII
Smil05G0004470.1.v1.484Alkaloid · TRI_TRII
Smil05G0004510.1.v1.484Alkaloid · TRI_TRII
Smil05G0011450.1.v1.484Alkaloid · TRI_TRII
Smil05G0026110.1.v1.484Alkaloid · TRI_TRII
Smil06G0007720.1.v1.484Alkaloid · TRI_TRII
Smil06G0007820.1.v1.484Alkaloid · TRI_TRII
Smil06G0011760.1.v1.484Alkaloid · TRI_TRII
Smil06G0012360.1.v1.484Alkaloid · TRI_TRII
Smil06G0015580.1.v1.484Alkaloid · TRI_TRII
Smil06G0016080.1.v1.484Alkaloid · TRI_TRII
Smil06G0029960.1.v1.484Alkaloid · TRI_TRII
Smil07G0005790.1.v1.484Alkaloid · TRI_TRII
Smil07G0009380.1.v1.484Alkaloid · TRI_TRII
Smil07G0019090.1.v1.484Alkaloid · TRI_TRII
Smil07G0019960.1.v1.484Alkaloid · TRI_TRII
SmilGWHAOSJ000006360008280.1.v1.484Alkaloid · TRI_TRII
SmilGWHAOSJ000008670012430.1.v1.484Alkaloid · TRI_TRII
SmilGWHAOSJ000009000013220.1.v1.484Alkaloid · TRI_TRII
Smil04G0017360.1.v1.484Alkaloid · TYDC_DDC
Smil00G0026390.1.v1.484Flavonoid · 4CL
Smil00G0035230.1.v1.484Flavonoid · 4CL
Smil00G0040380.1.v1.484Flavonoid · 4CL
Smil00G0047430.1.v1.484Flavonoid · 4CL
Smil01G0006480.1.v1.484Flavonoid · 4CL
Smil01G0007490.1.v1.484Flavonoid · 4CL
Smil01G0008000.1.v1.484Flavonoid · 4CL
Smil01G0008010.1.v1.484Flavonoid · 4CL
Smil01G0009540.1.v1.484Flavonoid · 4CL
Smil01G0016930.1.v1.484Flavonoid · 4CL
Smil01G0017850.1.v1.484Flavonoid · 4CL
Smil01G0023070.1.v1.484Flavonoid · 4CL
Smil01G0025560.1.v1.484Flavonoid · 4CL
Smil01G0026650.1.v1.484Flavonoid · 4CL
Smil01G0026830.1.v1.484Flavonoid · 4CL
Smil02G0006000.1.v1.484Flavonoid · 4CL
Smil02G0007300.1.v1.484Flavonoid · 4CL
Smil02G0023210.1.v1.484Flavonoid · 4CL
Smil02G0032370.1.v1.484Flavonoid · 4CL
Smil02G0037720.1.v1.484Flavonoid · 4CL
Smil03G0000280.1.v1.484Flavonoid · 4CL
Smil03G0016440.1.v1.484Flavonoid · 4CL

Quantitative legend: measured cells use a diverging row z-score scale with a meaningful centre at zero. Raw values remain available in cell inspectors.

Mapping boundary: Species-level transcriptome matrix summaries are shown independently. Candidate IDs are not joined to expression IDs because annotation versions do not map directly.