LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

CODM_T6ODM

CODM / T6ODM enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
3,377
Species with candidates
80
Species with assignments
80
Source assignments
4,136
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,377 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
4,136
Public candidate count
3,377
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 16850 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 15650 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 12950 Available
Salvia splendensNepetoideae · Salvia Stable locus 11150 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 10250 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 9850 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 9350 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 9050 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 9050 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 7850 Available
Salvia rosmarinusNepetoideae · Salvia Stable locus 6950 Available
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 6550 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 6550 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 6450 Available
Glechoma longitubaNepetoideae · Glechoma Stable locus 6250 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 6150 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 6150 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 5950 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 5950 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 5850 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 5550 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 5550 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 5450 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 5250 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 5150 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 5150 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 5150 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 5150 Available
Vitex agnus-castusViticoideae · Vitex Stable locus 5150 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 5050 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 5050 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 4949 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 4949 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 4747 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 4747 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 4646 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 4646 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 4646 No matrix
Isodon serraNepetoideae · Isodon Stable locus 4545 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 4545 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 4545 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 4444 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 4242 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 4040 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 4040 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 3939 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 3939 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 3939 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 3939 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 3838 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 3838 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 3838 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 3838 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 3737 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 3737 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 3737 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 3636 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 3636 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 3636 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 3636 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 3636 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 3636 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 3636 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 3636 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 3636 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 3434 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 3434 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 3434 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 3333 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 3333 No matrix
Lamium albumLamioideae · Lamium Stable locus 3232 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 3232 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 3030 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 3030 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 3030 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 2929 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 2727 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 2626 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 2626 Available
Stachys officinalisLamioideae · Stachys Stable locus 2323 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
g4392.t1
Salvia sclareaAlkaloid · CODM_T6ODMblast+hmm High 31.4%169.5
ocimum_sanctum_Ote100269700031
Ocimum tenuiflorumAlkaloid · CODM_T6ODMblast+hmm High 31.0%168.9
Sch000010444
Schizonepeta tenuifoliaAlkaloid · CODM_T6ODMblast+hmm High 30.8%168.7
GWHPBJVA028187
Thymus quinquecostatusAlkaloid · CODM_T6ODMblast+hmm High 30.2%167.2
Mc7g16590.1
Mosla chinensisAlkaloid · CODM_T6ODMblast+hmm High 35.1%165.8
Es5B.G189000.t1
Elsholtzia splendensAlkaloid · CODM_T6ODMblast+hmm High 30.4%165.6
Mlonscaffold_10_length_330881730004230.1.v1.326
Mentha longifoliaAlkaloid · CODM_T6ODMblast+hmm High 30.7%165.3
origanum_vulgare_264.g392.t1
Origanum vulgareAlkaloid · CODM_T6ODMblast+hmm High 30.4%165.0
g19459.t1
Hyssopus officinalisAlkaloid · CODM_T6ODMblast+hmm High 34.1%164.2
Clgra_032813-T1
Clinopodium gracileAlkaloid · CODM_T6ODMblast+hmm High 33.0%163.7
ocimum_sanctum_Ote100155840011
Ocimum tenuiflorumAlkaloid · CODM_T6ODMblast+hmm High 31.6%163.5
g22526.t1
Hyssopus officinalisAlkaloid · CODM_T6ODMblast+hmm High 31.9%162.8
Mc2g29090.1
Mosla chinensisAlkaloid · CODM_T6ODMblast+hmm High 35.0%162.5
g11521.t1.2.5b44e31d
Hyssopus officinalisAlkaloid · CODM_T6ODMblast+hmm High 54.5%162.5
Clgra_032808-T1
Clinopodium gracileAlkaloid · CODM_T6ODMblast+hmm High 32.5%161.9
Pat_A12G027200.m1
Pogostemon cablinAlkaloid · CODM_T6ODMblast+hmm High 32.7%161.9
WEFR_c32858_g1_i1_len_1288
Westringia fruticosaAlkaloid · CODM_T6ODMblast+hmm High 39.6%161.9
g2798.t1.1.5b2d6af5
Nepeta catariaAlkaloid · CODM_T6ODMblast+hmm High 38.7%161.2
Es5B.G189500.t1
Elsholtzia splendensAlkaloid · CODM_T6ODMblast+hmm High 30.4%160.4
Teum.13G007820.2
Teucrium marumAlkaloid · CODM_T6ODMblast+hmm High 39.2%158.4
g42966.t1
Nepeta catariaAlkaloid · CODM_T6ODMblast+hmm High 32.2%156.7
CAame14G0015410.v1.94
Callicarpa americanaAlkaloid · CODM_T6ODMblast+hmm High 31.6%155.0
COCA_c56679_g1_i2_len_908
Collinsonia canadensisAlkaloid · CODM_T6ODMblast+hmm High 33.7%154.7
KAL1551455.1
Salvia divinorumAlkaloid · CODM_T6ODMblast+hmm High 31.2%153.1
Sbow01G0085950.1
Salvia bowleyanaAlkaloid · CODM_T6ODMblast+hmm High 54.4%152.7
ocimum_sanctum_Ote100163330102
Ocimum tenuiflorumAlkaloid · CODM_T6ODMblast+hmm High 30.2%152.7
tectona_grandis_Tg15g07490.t1
Tectona grandisAlkaloid · CODM_T6ODMblast+hmm High 30.1%152.6
GlLon_010068-T1
Glechoma longitubaAlkaloid · CODM_T6ODMblast+hmm High 48.9%152.5
PLBA_c40535_g2_i2_len_2141
Plectranthus barbatusAlkaloid · CODM_T6ODMblast+hmm High 33.9%152.1
Teum.12G006320.1
Teucrium marumAlkaloid · CODM_T6ODMblast+hmm High 32.5%151.4
Teum.12G006320.2
Teucrium marumAlkaloid · CODM_T6ODMblast+hmm High 32.6%150.8
Teum.02G001620.4
Teucrium marumAlkaloid · CODM_T6ODMblast+hmm High 50.0%150.6
Teum.02G001620.5
Teucrium marumAlkaloid · CODM_T6ODMblast+hmm High 50.0%150.2
PRLA_c66282_g5_i1_len_904
Prostanthera lasianthosAlkaloid · CODM_T6ODMblast+hmm High 33.8%149.7
GMPH_c32879_g1_i2_len_1438
Gmelina philippensisAlkaloid · CODM_T6ODMblast+hmm High 40.7%149.3
Sch000010415
Schizonepeta tenuifoliaAlkaloid · CODM_T6ODMblast+hmm High 50.8%149.0
PRMI_c27195_g1_i2_len_2395
Premna microphyllaAlkaloid · CODM_T6ODMblast+hmm High 59.1%147.0
evm.model.chr6.697
Prunella vulgarisAlkaloid · CODM_T6ODMblast+hmm High 41.3%147.0
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_20.600.mRNA1
Stenogyne calaminthoidesAlkaloid · CODM_T6ODMblast+hmm High 51.6%146.5
Teum.06G003440.3
Teucrium marumAlkaloid · CODM_T6ODMblast+hmm High 52.9%146.5
Sbai6A30T95.1
Scutellaria baicalensisAlkaloid · CODM_T6ODMblast+hmm High 35.3%145.4
1720.g4.t1
Ocimum basilicumAlkaloid · CODM_T6ODMblast+hmm High 49.6%144.8
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_6.683.mRNA1
Stenogyne calaminthoidesAlkaloid · CODM_T6ODMblast+hmm High 50.3%143.7
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_7.617.mRNA1
Stenogyne calaminthoidesAlkaloid · CODM_T6ODMblast+hmm High 57.6%143.3
Dru_2G0037850.2
Dracocephalum rupestreAlkaloid · CODM_T6ODMblast+hmm High 52.9%142.5
COPY_c74164_g1_i1_len_787
Cornutia pyramidataAlkaloid · CODM_T6ODMblast+hmm High 33.6%141.9
PEBA_c39395_g1_i1_len_1180
Petraeovitex bambusetoriumAlkaloid · CODM_T6ODMblast+hmm High 30.7%141.5
AGFO_c24242_g2_i3_len_1326
Agastache foeniculumAlkaloid · CODM_T6ODMblast+hmm High 53.6%141.4
LYAM_c18445_g1_i1_len_923
Lycopus americanusAlkaloid · CODM_T6ODMblast+hmm High 32.9%139.1
g1338.t1
Nepeta catariaAlkaloid · CODM_T6ODMblast+hmm High 38.7%139.0