LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

GES

GES enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
3,444
Species with candidates
80
Species with assignments
80
Source assignments
5,610
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,444 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
5,610
Public candidate count
3,444
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 31050 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 30850 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 29750 Available
Glechoma longitubaNepetoideae · Glechoma Stable locus 16250 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 16050 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 15950 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 13050 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 12750 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 12150 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 11550 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 10850 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 10850 Available
Salvia divinorumNepetoideae · Salvia Stable locus 10650 No matrix
Isodon serraNepetoideae · Isodon Stable locus 10550 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 10450 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 10150 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 9450 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 8950 Available
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 8550 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 8350 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 8050 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 7550 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 7150 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 7050 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 6950 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 6750 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 6750 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 6750 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 6550 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 6450 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 6450 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 6350 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 6350 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 6150 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 6150 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 5750 Available
Mentha x piperitaNepetoideae · Mentha Stable locus 5650 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 5650 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 5550 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 5550 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 5350 Available
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 5350 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 5250 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 5050 No matrix
Lamium albumLamioideae · Lamium Stable locus 4949 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 4949 Available
Stachys officinalisLamioideae · Stachys Stable locus 4949 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 4848 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 4646 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 4545 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 4444 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 4343 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 4343 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 4141 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 4040 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 3939 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 3737 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 3737 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 3737 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 3737 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 3636 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 3535 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 3535 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 3434 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 3434 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 3333 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 3232 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 3131 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 3030 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 3030 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 2828 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 2828 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 2828 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 2727 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 2626 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 2424 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 2323 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 2121 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 2020 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 55 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
g11673.t1.2.5b2d4a31
Nepeta catariaAlkaloid · GESblast+hmm High 47.1%601.8
rna-gnl|WGS:QIYW|chr05_38588047_38590393.mrna1
Perilla citriodoraAlkaloid · GESblast+hmm High 68.1%601.7
rna-gnl|WGS:QIYW|chr05_38588047_38590393.mrna1
Perilla frutescens var. hirtellaAlkaloid · GESblast+hmm High 68.1%601.7
Ms_c006g00143.1
Mosla soochowensisAlkaloid · GESblast+hmm High 53.9%601.5
Sch000024754
Schizonepeta tenuifoliaAlkaloid · GESblast+hmm High 56.6%601.3
COCA_c62542_g1_i3_len_2195
Collinsonia canadensisAlkaloid · GESblast+hmm High 43.8%600.8
382720.g26.t1
Ocimum basilicumAlkaloid · GESblast+hmm High 52.6%600.7
Ls7g01060.1
Leonurus sibiricusAlkaloid · GESblast+hmm High 44.1%600.7
Pat_B21G122000.m1
Pogostemon cablinAlkaloid · GESblast+hmm High 45.3%600.5
Pat_B21G122100.m1
Pogostemon cablinAlkaloid · GESblast+hmm High 45.3%600.5
Pat_B21G122200.m1
Pogostemon cablinAlkaloid · GESblast+hmm High 45.3%600.5
rna-gnl|WGS:QFCC|chr11_07288359_07293281.mrna1
Perilla frutescensAlkaloid · GESblast+hmm High 56.0%600.5
Sbow04G0047480.1
Salvia bowleyanaAlkaloid · GESblast+hmm High 45.6%600.0
Ls7g17270.1
Leonurus sibiricusAlkaloid · GESblast+hmm High 45.4%599.9
PLBA_c43448_g3_i1_len_1790
Plectranthus barbatusAlkaloid · GESblast+hmm High 53.1%599.9
382720.g30.t1
Ocimum basilicumAlkaloid · GESblast+hmm High 54.2%599.8
HOSA_c40042_g1_i2_len_1710
Holmskioldia sanguineaAlkaloid · GESblast+hmm High 56.4%599.5
rna-gnl|WGS:QFCC|chr14_52218833_52222883.mrna1
Perilla frutescensAlkaloid · GESblast+hmm High 67.0%599.5
XP_047937778.1
Salvia hispanicaAlkaloid · GESblast+hmm High 51.2%599.4
scutellaria_barbata_GWHPAOTP026062
Scutellaria barbataAlkaloid · GESblast+hmm High 53.6%599.4
Smil05G0007480.1.v1.484
Salvia miltiorrhizaAlkaloid · GESblast+hmm High 45.6%599.2
Pat_A21G131500.m1
Pogostemon cablinAlkaloid · GESblast+hmm High 45.5%598.8
AG34_scaffold1_21150T
Agastache rugosaAlkaloid · GESblast+hmm High 52.4%598.6
PLBA_c46945_g1_i1_len_1789
Plectranthus barbatusAlkaloid · GESblast+hmm High 43.0%598.6
PEAT_c33656_g1_i1_len_1801
Perovskia atriplicifoliaAlkaloid · GESblast+hmm High 55.3%598.5
AGFO_c26705_g1_i1_len_1873
Agastache foeniculumAlkaloid · GESblast+hmm High 52.4%598.3
XP_047937779.1
Salvia hispanicaAlkaloid · GESblast+hmm High 51.2%598.3
tectona_grandis_Tg09g03190.t1
Tectona grandisAlkaloid · GESblast+hmm High 63.9%598.3
rna-gnl|WGS:QFCC|chr09_03727804_03731486.mrna1
Perilla frutescensAlkaloid · GESblast+hmm High 53.1%598.2
tectona_grandis_TgUn491g00030.t1
Tectona grandisAlkaloid · GESblast+hmm High 63.7%598.0
rna-gnl|WGS:QFCC|chr02_28435631_28437990.mrna1
Perilla frutescensAlkaloid · GESblast+hmm High 67.7%597.9
Roff3840800440430
Salvia rosmarinusAlkaloid · GESblast+hmm High 52.2%597.7
PRMI_c45053_g1_i2_len_2137
Premna microphyllaAlkaloid · GESblast+hmm High 65.7%597.6
Ms_c007g03764.1
Mosla soochowensisAlkaloid · GESblast+hmm High 43.7%597.3
Teucrium_chamaedrys__Tcha137803
Teucrium chamaedrysAlkaloid · GESblast+hmm High 53.2%597.3
XP_042005662.1
Salvia splendensAlkaloid · GESblast+hmm High 65.7%596.5
origanum_vulgare_948.g61.t1
Origanum vulgareAlkaloid · GESblast+hmm High 56.0%596.4
LAAL_c28556_g2_i1_len_1877
Lamium albumAlkaloid · GESblast+hmm High 45.1%596.2
Teum.S024950.1
Teucrium marumAlkaloid · GESblast+hmm High 53.8%596.2
rna-gnl|WGS:QFCC|chr03_04761731_04765419.mrna1
Perilla frutescensAlkaloid · GESblast+hmm High 52.9%596.1
386161.g58.t1
Ocimum basilicumAlkaloid · GESblast+hmm High 52.2%595.7
evm.model.Chr07.1494
Callicarpa nudifloraAlkaloid · GESblast+hmm High 42.0%595.7
Ms_c003g02547.1
Mosla soochowensisAlkaloid · GESblast+hmm High 54.1%595.6
BAPS_c40721_g1_i2_len_2087
Ballota pseudodictamnusAlkaloid · GESblast+hmm High 44.1%595.3
Es2A.G067800.t1
Elsholtzia splendensAlkaloid · GESblast+hmm High 51.8%595.3
LAAN_c50327_g1_i1_len_1787
Lavandula angustifoliaAlkaloid · GESblast+hmm High 65.9%595.0
Roff27430362810
Salvia rosmarinusAlkaloid · GESblast+hmm High 53.9%595.0
evm.model.Chr15.235
Callicarpa nudifloraAlkaloid · GESblast+hmm High 60.8%595.0
MACO_g6452.t1
Marmoritis complanataAlkaloid · GESblast+hmm High 54.3%594.4
366655.g2.t1_366655.g3.t1
Ocimum basilicumAlkaloid · GESblast+hmm High 65.7%594.1