LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

GS

GS enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
1,222
Species with candidates
80
Species with assignments
80
Source assignments
1,237
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers1,222 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
1,237
Public candidate count
1,222
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 6050 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 5550 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 4141 Available
Salvia splendensNepetoideae · Salvia Stable locus 3131 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 2929 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 2727 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 2727 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 2424 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 2222 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 2222 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 2121 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 2121 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 2121 Available
Ajuga decumbensAjugoideae · Ajuga Stable locus 2020 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 2020 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 2020 Available
Salvia bowleyanaNepetoideae · Salvia Stable locus 1919 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 1919 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 1919 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 1818 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 1818 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1818 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 1717 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 1717 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1616 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 1616 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 1515 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 1515 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 1515 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 1414 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 1414 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 1414 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 1414 No matrix
Isodon serraNepetoideae · Isodon Stable locus 1414 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 1414 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1313 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 1313 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1313 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 1313 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 1313 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 1313 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 1313 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 1313 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 1313 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 1313 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 1212 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 1212 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1212 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 1212 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 1212 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1212 Available
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1212 Available
Salvia sclareaNepetoideae · Salvia Stable locus 1212 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 1111 No matrix
Lamium albumLamioideae · Lamium Stable locus 1111 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 1111 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 1111 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 1111 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 1111 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 1010 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 1010 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 1010 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 1010 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 1010 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1010 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1010 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 99 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 99 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 99 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 99 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 99 Available
Mentha x piperitaNepetoideae · Mentha Stable locus 99 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 99 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 88 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 88 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 88 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 77 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 66 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 44 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 44 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
PEBA_c74326_g1_i1_len_498
Petraeovitex bambusetoriumAlkaloid · GSblast+hmm High 56.3%86.2
Teum.05G013510.1
Teucrium marumAlkaloid · GSblast+hmm High 49.3%85.4
scutellaria_barbata_GWHPAOTP024906
Scutellaria barbataAlkaloid · GSblast+hmm High 48.0%85.1
Pat_B17G090400.m3
Pogostemon cablinAlkaloid · GSblast+hmm High 43.7%84.0
SAOF_c23465_g1_i1_len_857
Salvia officinalisAlkaloid · GSblast+hmm High 38.0%83.8
g11988.t1
Ajuga decumbensAlkaloid · GSblast+hmm High 61.9%83.2
TECA_c19908_g1_i1_len_672
Teucrium canadenseAlkaloid · GSblast+hmm High 56.9%81.7
g24455.t1
Nepeta catariaAlkaloid · GSblast+hmm High 54.0%81.5
Teum.05G010900.2
Teucrium marumAlkaloid · GSblast+hmm High 56.2%81.4
MAVU_c35541_g1_i1_len_281
Marrubium vulgareAlkaloid · GSblast+hmm High 50.0%80.5
381014.g15.t1
Ocimum basilicumAlkaloid · GSblast+hmm High 56.1%77.6
ORMA_c153041_g1_i1_len_261
Origanum majoranaAlkaloid · GSblast+hmm High 55.7%77.3
Roff24210319330
Salvia rosmarinusAlkaloid · GSblast+hmm High 53.4%76.6
LECA_c16664_g1_i1_len_252
Leonurus cardiacaAlkaloid · GSblast+hmm High 56.5%75.9
g26631.t1
Nepeta catariaAlkaloid · GSblast+hmm High 35.9%74.1
g8242.t1
Hyssopus officinalisAlkaloid · GSblast+hmm High 55.5%73.8
Clgra_035773-T1
Clinopodium gracileAlkaloid · GSblast+hmm High 56.8%73.4
Teum.01G004050.1
Teucrium marumAlkaloid · GSblast+hmm High 52.2%70.7
LECA_c21458_g1_i1_len_546
Leonurus cardiacaAlkaloid · GSblast+hmm High 51.0%69.9
LYAM_c83433_g1_i1_len_250
Lycopus americanusAlkaloid · GSblast+hmm High 54.1%69.9
g51288.t1
Nepeta catariaAlkaloid · GSblast+hmm High 32.2%68.6
THVU_c58475_g1_i1_len_611
Thymus vulgarisAlkaloid · GSblast+hmm High 58.6%67.5
g25445.t1
Ajuga decumbensAlkaloid · GSblast+hmm High 55.9%67.3
VIAG_c20579_g1_i1_len_265
Vitex agnus-castusAlkaloid · GSblast+hmm High 57.3%66.3
PHFR_c133102_g1_i1_len_384
Phlomis fruticosaAlkaloid · GSblast+hmm High 58.5%65.2
AGFO_c35012_g1_i1_len_361
Agastache foeniculumAlkaloid · GSblast+hmm High 64.6%63.3
PRMI_c44264_g2_i1_len_1243
Premna microphyllaAlkaloid · GSblast+hmm High 54.2%62.8
CAame01G0047380.v1.94
Callicarpa americanaAlkaloid · GSblast+hmm High 63.2%62.5
CAame01G0047390.v1.94
Callicarpa americanaAlkaloid · GSblast+hmm High 63.2%62.5
PEBA_c43073_g1_i1_len_1214
Petraeovitex bambusetoriumAlkaloid · GSblast+hmm High 60.3%61.9
CLBU_c43331_g2_i1_len_948
Clerodendrum bungeiAlkaloid · GSblast+hmm High 59.1%61.5
WEFR_c43490_g1_i3_len_1072
Westringia fruticosaAlkaloid · GSblast+hmm High 56.2%61.5
THVU_c63112_g1_i1_len_1026
Thymus vulgarisAlkaloid · GSblast+hmm High 57.2%61.1
LELE_c64709_g1_i1_len_803
Leonotis leonurusAlkaloid · GSblast+hmm High 55.0%58.5
PHFR_c80970_g1_i1_len_690
Phlomis fruticosaAlkaloid · GSblast+hmm High 61.0%58.2
g47759.t1.3.5b2d4a25
Nepeta catariaAlkaloid · GSblast+hmm High 46.7%57.9
Lj5g17020.1
Leonurus japonicusAlkaloid · GSblast+hmm High 55.8%56.9
g51288.t1.1.5b2d6ae9
Nepeta catariaAlkaloid · GSblast+hmm High 30.5%56.7
g51288.t1.2.5b2d6ae9
Nepeta catariaAlkaloid · GSblast+hmm High 30.5%56.7
Teum.06G016730.1
Teucrium marumAlkaloid · GSblast+hmm High 48.1%55.7
Teum.05G013520.1
Teucrium marumAlkaloid · GSblast+hmm High 58.4%55.5
BAPS_c40502_g1_i1_len_1140
Ballota pseudodictamnusAlkaloid · GSblast+hmm High 56.3%55.2
DRSE_g10100.t1
Drepanocaryum sewerzowiiAlkaloid · GSblast+hmm High 45.6%55.2
g20583.t1
Ajuga decumbensAlkaloid · GSblast+hmm High 63.7%54.5
g36735.t1
Nepeta catariaAlkaloid · GSblast+hmm High 47.0%54.0
XP_042023090.1
Salvia splendensAlkaloid · GSblast+hmm High 58.4%53.8
evm.model.Chr10.671
Callicarpa nudifloraAlkaloid · GSblast+hmm High 52.8%52.4
rna-gnl|WGS:QFCC|chr02_64781182_64785422.mrna1
Perilla frutescensAlkaloid · GSblast+hmm High 40.6%52.4
HYSU_c22050_g1_i1_len_695
Hyptis suaveolensAlkaloid · GSblast+hmm High 48.7%51.8
DRSE_g7175.t1
Drepanocaryum sewerzowiiAlkaloid · GSblast+hmm High 62.7%51.5