LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

GS

GS enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
1,222
Species with candidates
80
Species with assignments
80
Source assignments
1,237
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers1,222 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
1,237
Public candidate count
1,222
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 6050 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 5550 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 4141 Available
Salvia splendensNepetoideae · Salvia Stable locus 3131 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 2929 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 2727 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 2727 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 2424 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 2222 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 2222 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 2121 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 2121 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 2121 Available
Ajuga decumbensAjugoideae · Ajuga Stable locus 2020 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 2020 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 2020 Available
Salvia bowleyanaNepetoideae · Salvia Stable locus 1919 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 1919 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 1919 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 1818 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 1818 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1818 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 1717 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 1717 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1616 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 1616 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 1515 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 1515 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 1515 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 1414 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 1414 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 1414 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 1414 No matrix
Isodon serraNepetoideae · Isodon Stable locus 1414 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 1414 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1313 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 1313 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1313 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 1313 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 1313 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 1313 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 1313 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 1313 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 1313 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 1313 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 1212 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 1212 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1212 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 1212 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 1212 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1212 Available
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1212 Available
Salvia sclareaNepetoideae · Salvia Stable locus 1212 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 1111 No matrix
Lamium albumLamioideae · Lamium Stable locus 1111 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 1111 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 1111 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 1111 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 1111 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 1010 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 1010 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 1010 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 1010 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 1010 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1010 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1010 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 99 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 99 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 99 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 99 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 99 Available
Mentha x piperitaNepetoideae · Mentha Stable locus 99 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 99 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 88 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 88 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 88 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 77 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 66 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 44 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 44 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
SAOF_c17175_g1_i1_len_1267
Salvia officinalisAlkaloid · GSblast+hmm High 55.4%160.9
Sch000006412
Schizonepeta tenuifoliaAlkaloid · GSblast+hmm High 56.0%160.9
Teum.01G004040.3
Teucrium marumAlkaloid · GSblast+hmm High 55.0%160.9
rna-gnl|WGS:QIYW|chr01_01069456_01070520.mrna1
Perilla citriodoraAlkaloid · GSblast+hmm High 58.1%160.9
rna-gnl|WGS:QIYW|chr01_01069456_01070520.mrna1
Perilla frutescens var. hirtellaAlkaloid · GSblast+hmm High 58.1%160.9
COTO_c14414_g1_i1_len_951
Congea tomentosaAlkaloid · GSblast+hmm High 55.2%160.8
XP_047969653.1
Salvia hispanicaAlkaloid · GSblast+hmm High 55.3%160.8
XP_047969654.1
Salvia hispanicaAlkaloid · GSblast+hmm High 55.2%160.8
XP_047970222.1
Salvia hispanicaAlkaloid · GSblast+hmm High 55.3%160.8
rna-gnl|WGS:QFCC|chr18_28661992_28663235.mrna1
Perilla frutescensAlkaloid · GSblast+hmm High 54.9%160.8
GlLon_018278-T1
Glechoma longitubaAlkaloid · GSblast+hmm High 56.4%160.7
HOSA_c42316_g1_i1_len_1309
Holmskioldia sanguineaAlkaloid · GSblast+hmm High 59.1%160.7
PEAT_c42331_g1_i1_len_1537
Perovskia atriplicifoliaAlkaloid · GSblast+hmm High 53.5%160.7
XP_047969655.1
Salvia hispanicaAlkaloid · GSblast+hmm High 55.9%160.6
XP_047969656.1
Salvia hispanicaAlkaloid · GSblast+hmm High 55.6%160.6
GMPH_c33714_g1_i2_len_1242
Gmelina philippensisAlkaloid · GSblast+hmm High 58.6%160.5
GMPH_c93189_g1_i1_len_897
Gmelina philippensisAlkaloid · GSblast+hmm High 56.7%160.5
MEPI_c55452_g3_i1_len_903
Mentha x piperitaAlkaloid · GSblast+hmm High 56.8%160.5
PEBA_c25759_g1_i1_len_1600
Petraeovitex bambusetoriumAlkaloid · GSblast+hmm High 57.2%160.5
g16202.t1
Salvia sclareaAlkaloid · GSblast+hmm High 54.6%160.5
g16214.t1
Salvia sclareaAlkaloid · GSblast+hmm High 54.3%160.5
g16215.t1
Salvia sclareaAlkaloid · GSblast+hmm High 54.6%160.5
g24453.t1
Nepeta catariaAlkaloid · GSblast+hmm High 58.4%160.5
CLBU_c41085_g1_i3_len_1286
Clerodendrum bungeiAlkaloid · GSblast+hmm High 56.3%160.4
GLHE_c57699_g2_i1_len_1360
Glechoma hederaceaAlkaloid · GSblast+hmm High 56.7%160.4
GMPH_c90620_g1_i1_len_1587
Gmelina philippensisAlkaloid · GSblast+hmm High 59.7%160.4
Sch000008114
Schizonepeta tenuifoliaAlkaloid · GSblast+hmm High 57.5%160.4
COCA_c68872_g1_i1_len_1408
Collinsonia canadensisAlkaloid · GSblast+hmm High 55.4%160.3
TECA_c27655_g1_i1_len_1685
Teucrium canadenseAlkaloid · GSblast+hmm High 56.9%160.3
Teucrium_chamaedrys__Tcha46094
Teucrium chamaedrysAlkaloid · GSblast+hmm High 55.7%160.3
tectona_grandis_Tg09g09870.t1
Tectona grandisAlkaloid · GSblast+hmm High 60.6%160.3
CAame11G0013490.v1.94
Callicarpa americanaAlkaloid · GSblast+hmm High 60.1%160.2
PEBA_c24904_g1_i2_len_1568
Petraeovitex bambusetoriumAlkaloid · GSblast+hmm High 57.4%160.2
evm.model.chr8.257
Prunella vulgarisAlkaloid · GSblast+hmm High 57.4%160.2
g12774.t1
Nepeta catariaAlkaloid · GSblast+hmm High 58.4%160.1
LELE_c7154_g1_i1_len_1519
Leonotis leonurusAlkaloid · GSblast+hmm High 53.9%160.0
Mc2g25310.1
Mosla chinensisAlkaloid · GSblast+hmm High 56.0%160.0
PRMI_c26633_g1_i2_len_1299
Premna microphyllaAlkaloid · GSblast+hmm High 56.8%160.0
VIAG_c47111_g4_i1_len_1465
Vitex agnus-castusAlkaloid · GSblast+hmm High 54.5%160.0
g16371.t1
Salvia sclareaAlkaloid · GSblast+hmm High 54.9%160.0
570345.g2.t1
Ocimum basilicumAlkaloid · GSblast+hmm High 55.2%159.9
570346.g2.t1
Ocimum basilicumAlkaloid · GSblast+hmm High 55.2%159.9
DRSE_g15451.t1
Drepanocaryum sewerzowiiAlkaloid · GSblast+hmm High 54.0%159.9
PRLA_c42747_g1_i1_len_1289
Prostanthera lasianthosAlkaloid · GSblast+hmm High 54.5%159.9
Teucrium_chamaedrys__Tcha176879
Teucrium chamaedrysAlkaloid · GSblast+hmm High 57.8%159.9
Teucrium_chamaedrys__Tcha46092
Teucrium chamaedrysAlkaloid · GSblast+hmm High 55.8%159.9
scutellaria_barbata_GWHPAOTP025668
Scutellaria barbataAlkaloid · GSblast+hmm High 57.2%159.9
MESP_c38636_g1_i1_len_1690
Mentha spicataAlkaloid · GSblast+hmm High 56.7%159.8
Mlonscaffold_2_length_455260290067070.1.v1.326
Mentha longifoliaAlkaloid · GSblast+hmm High 56.4%159.8
Mlonscaffold_2_length_455260290067110.1.v1.326
Mentha longifoliaAlkaloid · GSblast+hmm High 56.4%159.8