LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

GS

GS enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
1,222
Species with candidates
80
Species with assignments
80
Source assignments
1,237
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers1,222 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
1,237
Public candidate count
1,222
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 6050 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 5550 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 4141 Available
Salvia splendensNepetoideae · Salvia Stable locus 3131 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 2929 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 2727 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 2727 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 2424 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 2222 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 2222 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 2121 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 2121 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 2121 Available
Ajuga decumbensAjugoideae · Ajuga Stable locus 2020 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 2020 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 2020 Available
Salvia bowleyanaNepetoideae · Salvia Stable locus 1919 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 1919 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 1919 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 1818 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 1818 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1818 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 1717 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 1717 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1616 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 1616 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 1515 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 1515 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 1515 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 1414 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 1414 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 1414 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 1414 No matrix
Isodon serraNepetoideae · Isodon Stable locus 1414 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 1414 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1313 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 1313 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1313 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 1313 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 1313 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 1313 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 1313 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 1313 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 1313 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 1313 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 1212 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 1212 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1212 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 1212 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 1212 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1212 Available
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1212 Available
Salvia sclareaNepetoideae · Salvia Stable locus 1212 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 1111 No matrix
Lamium albumLamioideae · Lamium Stable locus 1111 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 1111 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 1111 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 1111 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 1111 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 1010 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 1010 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 1010 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 1010 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 1010 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1010 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1010 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 99 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 99 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 99 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 99 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 99 Available
Mentha x piperitaNepetoideae · Mentha Stable locus 99 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 99 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 88 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 88 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 88 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 77 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 66 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 44 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 44 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
evm.model.ptg000016l.1231
Isodon serraAlkaloid · GSblast+hmm High 54.5%156.8
tectona_grandis_Tg13g05680.t1
Tectona grandisAlkaloid · GSblast+hmm High 57.4%156.8
COCA_c55300_g1_i1_len_1299
Collinsonia canadensisAlkaloid · GSblast+hmm High 54.9%156.7
Ms_c006g01398.1
Mosla soochowensisAlkaloid · GSblast+hmm High 57.8%156.7
XP_047955951.1
Salvia hispanicaAlkaloid · GSblast+hmm High 53.4%156.7
KAL8546056.1
Phlomoides rotataAlkaloid · GSblast+hmm High 54.4%156.6
SAOF_c6715_g1_i1_len_1458
Salvia officinalisAlkaloid · GSblast+hmm High 57.8%156.6
Smil06G0017690.1.v1.484
Salvia miltiorrhizaAlkaloid · GSblast+hmm High 54.3%156.6
PEAT_c28916_g1_i1_len_1134
Perovskia atriplicifoliaAlkaloid · GSblast+hmm High 59.6%156.5
PRMI_c44444_g1_i1_len_1485
Premna microphyllaAlkaloid · GSblast+hmm High 56.7%156.5
Pat_A27G067700.m1
Pogostemon cablinAlkaloid · GSblast+hmm High 54.1%156.5
XP_042025790.1
Salvia splendensAlkaloid · GSblast+hmm High 58.8%156.5
Mlonscaffold_6_length_375374740156110.1.v1.326
Mentha longifoliaAlkaloid · GSblast+hmm High 59.1%156.4
1359.g21.t1
Ocimum basilicumAlkaloid · GSblast+hmm High 53.7%156.3
Teum.S044220.2
Teucrium marumAlkaloid · GSblast+hmm High 56.3%156.3
XP_042037618.1
Salvia splendensAlkaloid · GSblast+hmm High 53.2%156.3
evm.model.ptg000016l.1232
Isodon serraAlkaloid · GSblast+hmm High 54.8%156.3
KAL1569702.1
Salvia divinorumAlkaloid · GSblast+hmm High 58.3%156.2
Ms_c012g00852.1
Mosla soochowensisAlkaloid · GSblast+hmm High 52.9%156.1
XP_042014122.1
Salvia splendensAlkaloid · GSblast+hmm High 53.4%156.1
Dru_3G0019040.1
Dracocephalum rupestreAlkaloid · GSblast+hmm High 54.8%156.0
Ms_c012g00607.1
Mosla soochowensisAlkaloid · GSblast+hmm High 54.6%156.0
g13820.t1
Nepeta catariaAlkaloid · GSblast+hmm High 54.9%156.0
Teum.S044220.3
Teucrium marumAlkaloid · GSblast+hmm High 57.7%155.9
Teum.S044220.1
Teucrium marumAlkaloid · GSblast+hmm High 57.5%155.8
KAL8546055.1
Phlomoides rotataAlkaloid · GSblast+hmm High 53.7%155.7
LECA_c79338_g1_i1_len_781
Leonurus cardiacaAlkaloid · GSblast+hmm High 54.8%155.6
evm.model.LG13.903
Clinopodium barosmumAlkaloid · GSblast+hmm High 54.6%155.6
GLHE_c59225_g1_i1_len_1250
Glechoma hederaceaAlkaloid · GSblast+hmm High 54.9%155.5
MACO_g11256.t1
Marmoritis complanataAlkaloid · GSblast+hmm High 55.5%155.5
VIAG_c41887_g2_i1_len_1455
Vitex agnus-castusAlkaloid · GSblast+hmm High 56.8%155.5
XP_042042802.1
Salvia splendensAlkaloid · GSblast+hmm High 53.2%155.5
XP_047969852.1
Salvia hispanicaAlkaloid · GSblast+hmm High 52.9%155.5
COPY_c76254_g1_i4_len_1335
Cornutia pyramidataAlkaloid · GSblast+hmm High 55.2%155.4
g5504.t1
Ajuga decumbensAlkaloid · GSblast+hmm High 56.0%155.4
754.g16.t1
Ocimum basilicumAlkaloid · GSblast+hmm High 58.3%155.3
AGFO_c18949_g1_i1_len_1302
Agastache foeniculumAlkaloid · GSblast+hmm High 53.5%155.3
MODI_c37086_g1_i1_len_1368
Monarda didymaAlkaloid · GSblast+hmm High 58.8%155.3
ROMY_c73203_g2_i1_len_1484
Rotheca myricoidesAlkaloid · GSblast+hmm High 54.5%155.3
Teucrium_chamaedrys__Tcha46088
Teucrium chamaedrysAlkaloid · GSblast+hmm High 59.7%155.3
evm.model.Chr01.515
Callicarpa nudifloraAlkaloid · GSblast+hmm High 57.1%155.3
COCA_c61506_g1_i1_len_1288
Collinsonia canadensisAlkaloid · GSblast+hmm High 58.1%155.2
KAL8546053.1
Phlomoides rotataAlkaloid · GSblast+hmm High 54.5%155.2
ROMY_c78100_g1_i1_len_1452
Rotheca myricoidesAlkaloid · GSblast+hmm High 57.8%155.2
XP_042038697.1
Salvia splendensAlkaloid · GSblast+hmm High 54.7%155.2
origanum_vulgare_402.g69.t1
Origanum vulgareAlkaloid · GSblast+hmm High 56.8%155.2
22:ILLG12G77.29m1
Isodon lophanthoidesAlkaloid · GSblast+hmm High 57.8%155.1
KAL8546052.1
Phlomoides rotataAlkaloid · GSblast+hmm High 54.7%155.1
evm.model.ptg000017l.950
Isodon serraAlkaloid · GSblast+hmm High 57.8%155.1
HOSA_c46461_g1_i3_len_1296
Holmskioldia sanguineaAlkaloid · GSblast+hmm High 57.1%155.0