LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

ODC

ODC enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
1,300
Species with candidates
80
Species with assignments
80
Source assignments
1,300
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers1,300 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
1,300
Public candidate count
1,300
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 4747 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 4545 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 4040 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 3939 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 3535 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 2929 Available
Teucrium marumAjugoideae · Teucrium Stable locus 2929 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 2626 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 2424 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 2424 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 2323 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 2323 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 2222 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 2222 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 2121 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 2121 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 2020 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1919 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 1919 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 1919 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 1919 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 1818 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 1818 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1717 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 1616 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 1616 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1616 No matrix
Lamium albumLamioideae · Lamium Stable locus 1616 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 1616 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 1515 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 1515 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1515 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 1515 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 1515 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 1515 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 1515 Available
Teucrium canadenseAjugoideae · Teucrium Stable locus 1515 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 1414 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 1414 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 1414 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 1414 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 1313 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 1313 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 1313 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 1313 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 1313 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1313 Available
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 1313 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1313 Available
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 1212 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 1212 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 1212 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 1212 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 1212 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 1212 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 1212 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1212 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 1111 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 1111 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 1111 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 1111 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 1111 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 1111 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 1111 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 1111 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 1111 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1111 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 1010 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 1010 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 1010 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 1010 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 1010 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 1010 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 99 No matrix
Isodon serraNepetoideae · Isodon Stable locus 99 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 88 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 88 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 88 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 77 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 66 Available

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
DRSE_g10847.t1
Drepanocaryum sewerzowiiAlkaloid · ODCblast+hmm High 80.7%59.3
g1851.t1
Ajuga decumbensAlkaloid · ODCblast+hmm High 83.9%59.2
g20929.t1
Nepeta catariaAlkaloid · ODCblast+hmm High 82.7%59.1
g2621.t1
Nepeta mussiniiAlkaloid · ODCblast+hmm High 82.8%59.0
DRSE_g1979.t1
Drepanocaryum sewerzowiiAlkaloid · ODCblast+hmm High 82.9%58.8
WEFR_c23271_g1_i1_len_1671
Westringia fruticosaAlkaloid · ODCblast+hmm High 82.1%58.8
VIAG_c20887_g1_i1_len_1798
Vitex agnus-castusAlkaloid · ODCblast+hmm High 83.3%58.6
AJRE_c36850_g1_i1_len_1684
Ajuga reptansAlkaloid · ODCblast+hmm High 84.0%58.5
GMPH_c21650_g1_i1_len_1908
Gmelina philippensisAlkaloid · ODCblast+hmm High 82.9%58.4
g6530.t1
Hyssopus officinalisAlkaloid · ODCblast+hmm High 82.5%58.3
g6530.t1.1.5b43bdc4
Hyssopus officinalisAlkaloid · ODCblast+hmm High 82.5%58.3
g6530.t1.2.5b43bdc4
Hyssopus officinalisAlkaloid · ODCblast+hmm High 82.5%58.3
LYAM_c31166_g1_i1_len_1821
Lycopus americanusAlkaloid · ODCblast+hmm High 81.3%57.2
Dru_2G0039970.1
Dracocephalum rupestreAlkaloid · ODCblast+hmm High 82.2%56.9
PRLA_c67827_g1_i2_len_1833
Prostanthera lasianthosAlkaloid · ODCblast+hmm High 82.7%55.7
GLHE_c107895_g1_i1_len_283
Glechoma hederaceaAlkaloid · ODCblast+hmm High 42.3%55.4
THVU_c163300_g1_i1_len_260
Thymus vulgarisAlkaloid · ODCblast+hmm High 53.4%52.7
GlLon_021424-T1
Glechoma longitubaAlkaloid · ODCblast+hmm High 78.1%51.2
PHFR_c125013_g1_i1_len_264
Phlomis fruticosaAlkaloid · ODCblast+hmm High 51.8%51.1
PRLA_c108718_g1_i1_len_503
Prostanthera lasianthosAlkaloid · ODCblast+hmm High 38.1%48.8
Teum.02G028820.1
Teucrium marumAlkaloid · ODCblast+hmm High 78.0%48.0
Teum.02G028820.2
Teucrium marumAlkaloid · ODCblast+hmm High 78.0%48.0
Teum.02G028820.3
Teucrium marumAlkaloid · ODCblast+hmm High 78.0%48.0
KAL8489752.1
Phlomoides rotataAlkaloid · ODCblast+hmm High 77.7%47.9
KAL8489750.1
Phlomoides rotataAlkaloid · ODCblast+hmm High 76.7%46.1
LECA_c75212_g1_i1_len_289
Leonurus cardiacaAlkaloid · ODCblast+hmm High 51.8%45.7
PHFR_c159143_g1_i1_len_265
Phlomis fruticosaAlkaloid · ODCblast+hmm High 39.3%44.7
KAL8489751.1
Phlomoides rotataAlkaloid · ODCblast+hmm High 75.5%44.2
KAL8489749.1
Phlomoides rotataAlkaloid · ODCblast+hmm High 74.9%43.2
Pat_A02G237000.m1
Pogostemon cablinAlkaloid · ODCblast+hmm High 73.8%41.5
COCA_c42086_g1_i1_len_728
Collinsonia canadensisAlkaloid · ODCblast+hmm High 35.6%40.8
BAPS_c36247_g1_i1_len_729
Ballota pseudodictamnusAlkaloid · ODCblast+hmm High 35.6%40.7
KAL8489753.1
Phlomoides rotataAlkaloid · ODCblast+hmm High 69.5%39.9
ORMA_c42932_g1_i1_len_934
Origanum majoranaAlkaloid · ODCblast+hmm High 36.6%38.8
GLHE_c123821_g1_i1_len_286
Glechoma hederaceaAlkaloid · ODCblast+hmm High 45.7%35.0
PLBA_c17972_g1_i1_len_388
Plectranthus barbatusAlkaloid · ODCblast+hmm High 89.1%34.0
KAL8489754.1
Phlomoides rotataAlkaloid · ODCblast+hmm High 69.0%33.1
PRMI_c119875_g1_i1_len_287
Premna microphyllaAlkaloid · ODCblast+hmm High 35.9%26.1
COCA_c55160_g1_i1_len_739
Collinsonia canadensisAlkaloid · ODCblast+hmm High 40.6%20.5
ORMA_c48164_g1_i1_len_861
Origanum majoranaAlkaloid · ODCblast+hmm High 42.6%20.2
COPY_c81998_g1_i1_len_483
Cornutia pyramidataAlkaloid · ODCblast+hmm Medium 70.3%43.1
THVU_c2471_g1_i1_len_725
Thymus vulgarisAlkaloid · ODCblast+hmm Medium 48.6%14.6
LYAM_c69723_g1_i1_len_300
Lycopus americanusAlkaloid · ODCblast+hmm Medium 48.6%14.5
LAAN_c32562_g1_i1_len_256
Lavandula angustifoliaAlkaloid · ODCblast+hmm Medium 90.6%11.9
Roff11530109830
Salvia rosmarinusAlkaloid · ODCblast+hmm Medium 91.5%10.7
Roff11530109840
Salvia rosmarinusAlkaloid · ODCblast+hmm Medium 91.5%10.7
PLBA_c51703_g1_i1_len_343
Plectranthus barbatusAlkaloid · ODCblast+hmm Medium 92.1%10.3
Teum.02G028860.3
Teucrium marumAlkaloid · ODCblast+hmm Medium 59.6%9.4
1257.g20.t1
Ocimum basilicumAlkaloid · ODCblast Medium 54.2%—
1551.g38.t1
Ocimum basilicumAlkaloid · ODCblast Medium 37.6%—