LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

PYKS

PYKS enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
1,778
Species with candidates
80
Species with assignments
80
Source assignments
1,899
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers1,778 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
1,899
Public candidate count
1,778
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 11850 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 8750 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 5950 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 5750 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 4949 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 4949 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 4747 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 4343 Available
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 3838 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 3333 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 3333 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 3333 Available
Mosla soochowensisNepetoideae · Mosla Stable locus 3232 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 3030 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 2929 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 2929 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 2929 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 2828 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 2828 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 2828 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 2828 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 2828 Available
Thymus quinquecostatusNepetoideae · Thymus Stable locus 2828 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 2727 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 2727 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 2626 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 2626 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 2626 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 2525 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 2525 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 2525 Available
Tectona grandisTectonoideae · Tectona Stable locus 2525 Available
Teucrium marumAjugoideae · Teucrium Stable locus 2525 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 2323 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 2323 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 2323 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 2222 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 2222 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 2020 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 2020 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 1919 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1717 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 1717 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 1616 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 1616 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 1515 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 1515 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 1515 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 1515 Available
Origanum majoranaNepetoideae · Origanum Stable locus 1515 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 1515 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 1515 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1515 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 1414 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 1414 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 1414 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1414 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 1414 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 1414 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 1313 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 1313 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 1313 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 1313 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 1313 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 1313 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1313 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 1212 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 1212 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 1212 No matrix
Lamium albumLamioideae · Lamium Stable locus 1111 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 1111 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 1111 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 1111 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 1010 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 1010 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 1010 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 1010 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 99 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 99 No matrix
Isodon serraNepetoideae · Isodon Stable locus 88 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
rna-gnl|WGS:QFCC|chr06_10410381_10412844.mrna1
Perilla frutescensAlkaloid · PYKSblast+hmm High 64.7%579.0
Clgra_038445-T1
Clinopodium gracileAlkaloid · PYKSblast+hmm High 64.3%578.7
Mc8g09980.1
Mosla chinensisAlkaloid · PYKSblast+hmm High 62.0%578.4
rna-gnl|WGS:QIYW|chr07_13234253_13235796.mrna1
Perilla citriodoraAlkaloid · PYKSblast+hmm High 61.2%578.4
rna-gnl|WGS:QIYW|chr07_13234253_13235796.mrna1
Perilla frutescens var. hirtellaAlkaloid · PYKSblast+hmm High 61.2%578.4
Ms_c008g01894.1
Mosla soochowensisAlkaloid · PYKSblast+hmm High 61.7%577.6
rna-gnl|WGS:QFCC|chr13_13092145_13093688.mrna1
Perilla frutescensAlkaloid · PYKSblast+hmm High 61.7%577.4
g10681.t1
Nepeta mussiniiAlkaloid · PYKSblast+hmm High 64.0%577.1
rna-gnl|WGS:QFCC|chr04_57626423_57628922.mrna1
Perilla frutescensAlkaloid · PYKSblast+hmm High 64.5%577.1
rna-gnl|WGS:QIYW|chr03_10618337_10620823.mrna1
Perilla citriodoraAlkaloid · PYKSblast+hmm High 64.5%577.1
rna-gnl|WGS:QIYW|chr03_10618337_10620823.mrna1
Perilla frutescens var. hirtellaAlkaloid · PYKSblast+hmm High 64.5%577.1
Es1A.G257900.t1
Elsholtzia splendensAlkaloid · PYKSblast+hmm High 63.2%576.6
g36557.t1
Nepeta catariaAlkaloid · PYKSblast+hmm High 60.9%575.9
Es1B.G258700.t1
Elsholtzia splendensAlkaloid · PYKSblast+hmm High 63.0%574.9
DRSE_g20595.t1
Drepanocaryum sewerzowiiAlkaloid · PYKSblast+hmm High 63.2%574.6
XP_042050633.1
Salvia splendensAlkaloid · PYKSblast+hmm High 61.4%573.8
rna-gnl|WGS:QFCC|chr10_49386343_49387907.mrna1
Perilla frutescensAlkaloid · PYKSblast+hmm High 60.2%569.5
GlLon_000760-T1
Glechoma longitubaAlkaloid · PYKSblast+hmm High 61.5%569.4
g38582.t1
Hyssopus officinalisAlkaloid · PYKSblast+hmm High 61.2%567.1
Mlonscaffold_5_length_432313370129190.1.v1.326
Mentha longifoliaAlkaloid · PYKSblast+hmm High 63.5%565.3
g38583.t1
Hyssopus officinalisAlkaloid · PYKSblast+hmm High 62.5%563.3
g10680.t1
Nepeta mussiniiAlkaloid · PYKSblast+hmm High 62.9%562.2
Pat_B20G033000.m1
Pogostemon cablinAlkaloid · PYKSblast+hmm High 59.7%559.8
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_51.1350.mRNA1
Stenogyne calaminthoidesAlkaloid · PYKSblast+hmm High 60.4%559.2
Pat_A20G035700.m1
Pogostemon cablinAlkaloid · PYKSblast+hmm High 59.7%558.8
Roff17220221300
Salvia rosmarinusAlkaloid · PYKSblast+hmm High 62.0%558.0
g38584.t1.1.5b43bdbc
Hyssopus officinalisAlkaloid · PYKSblast+hmm High 71.7%557.9
g39483.t1
Nepeta catariaAlkaloid · PYKSblast+hmm High 60.6%557.4
379969.g35.t1
Ocimum basilicumAlkaloid · PYKSblast+hmm High 59.6%557.0
PEBA_c37321_g1_i1_len_2633
Petraeovitex bambusetoriumAlkaloid · PYKSblast+hmm High 70.2%556.3
Pat_A19G042200.m1
Pogostemon cablinAlkaloid · PYKSblast+hmm High 61.1%555.0
379969.g33.t1
Ocimum basilicumAlkaloid · PYKSblast+hmm High 59.7%554.3
PRMI_c51934_g1_i1_len_1201
Premna microphyllaAlkaloid · PYKSblast+hmm High 68.6%554.0
Pat_A19G042100.m1
Pogostemon cablinAlkaloid · PYKSblast+hmm High 60.1%552.4
Pat_A20G040300.m1
Pogostemon cablinAlkaloid · PYKSblast+hmm High 59.8%552.0
Pat_A20G040700.m1
Pogostemon cablinAlkaloid · PYKSblast+hmm High 61.2%551.0
XP_042065162.1
Salvia splendensAlkaloid · PYKSblast+hmm High 60.4%544.8
Pat_B20G037900.m1
Pogostemon cablinAlkaloid · PYKSblast+hmm High 61.0%544.2
XP_047947948.1
Salvia hispanicaAlkaloid · PYKSblast+hmm High 59.9%543.6
rna-gnl|WGS:QIYW|chr08_55093724_55096635.mrna1
Perilla citriodoraAlkaloid · PYKSblast+hmm High 58.9%542.5
rna-gnl|WGS:QIYW|chr08_55093724_55096635.mrna1
Perilla frutescens var. hirtellaAlkaloid · PYKSblast+hmm High 58.9%542.5
486.g66.t1
Ocimum basilicumAlkaloid · PYKSblast+hmm High 61.8%541.5
GlLon_005375-T1
Glechoma longitubaAlkaloid · PYKSblast+hmm High 63.7%541.0
rna-gnl|WGS:QFCC|chr12_56135914_56138831.mrna1
Perilla frutescensAlkaloid · PYKSblast+hmm High 58.9%540.5
Smil03G0003660.1.v1.484
Salvia miltiorrhizaAlkaloid · PYKSblast+hmm High 60.2%539.4
rna-gnl|WGS:QFCC|chr11_06078930_06081821.mrna1
Perilla frutescensAlkaloid · PYKSblast+hmm High 58.4%539.3
origanum_vulgare_878.g38.t1
Origanum vulgareAlkaloid · PYKSblast+hmm High 59.6%538.4
1568.g59.t1
Ocimum basilicumAlkaloid · PYKSblast+hmm High 61.3%536.1
Roff26840355750
Salvia rosmarinusAlkaloid · PYKSblast+hmm High 58.8%535.6
385524.g44.t1
Ocimum basilicumAlkaloid · PYKSblast+hmm High 59.4%535.4