Pathway-family scientific record

`STR`

STR enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidates Compare species CSV

Stable locus plantsmeAlkaloid-related biosynthesis

Public candidate IDs: 3,988
Species with candidates: 80
Species with assignments: 80
Source assignments: 8,230
Gene-tree candidates: 0
Motif candidates: 0

Evidence profile

Available evidence layers

◆Candidate identifiers3,988 public species-linked identifiers can be inspected.

GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.

MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.

100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta: Not calculated
Prevalence delta: Not calculated
Comparable source: PlantSME family assignments
Comparable source count: 8,230
Public candidate count: 3,988
Evidence mode: plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

Species	Evidence state	Source count	Candidate IDs	Expression
Teucrium chamaedrysAjugoideae · Teucrium	Stable locus	372	50	No matrix
Pogostemon cablinLamioideae · Pogostemon	Stable locus	348	50	Available
Callicarpa americanaCallicarpoideae · Callicarpa	Stable locus	225	50	No matrix
Nepeta catariaNepetoideae · Nepeta	Stable locus	217	50	Available
Teucrium marumAjugoideae · Teucrium	Stable locus	199	50	No matrix
Salvia splendensNepetoideae · Salvia	Stable locus	176	50	No matrix
Ocimum basilicumNepetoideae · Ocimum	Stable locus	163	50	Available
Hyssopus officinalisNepetoideae · Hyssopus	Stable locus	160	50	No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne	Stable locus	159	50	No matrix
Elsholtzia splendensNepetoideae · Elsholtzia	Stable locus	154	50	No matrix
Nepeta mussiniiNepetoideae · Nepeta	Stable locus	141	50	Available
Phlomoides rotataLamioideae · Phlomoides	Stable locus	131	50	No matrix
Salvia rosmarinusNepetoideae · Salvia	Stable locus	127	50	Available
Dracocephalum rupestreNepetoideae · Dracocephalum	Stable locus	115	50	No matrix
Phlomis fruticosaLamioideae · Phlomis	Stable locus	115	50	No matrix
Ballota pseudodictamnusLamioideae · Ballota	Stable locus	114	50	No matrix
Perilla frutescensNepetoideae · Perilla	Stable locus	111	50	No matrix
Rotheca myricoidesAjugoideae · Rotheca	Stable locus	108	50	No matrix
Collinsonia canadensisNepetoideae · Collinsonia	Stable locus	106	50	No matrix
Clinopodium barosmumNepetoideae · Clinopodium	Stable locus	105	50	No matrix
Marrubium vulgareLamioideae · Marrubium	Stable locus	104	50	No matrix
Teucrium canadenseAjugoideae · Teucrium	Stable locus	104	50	No matrix
Plectranthus barbatusNepetoideae · Plectranthus	Stable locus	103	50	No matrix
Tectona grandisTectonoideae · Tectona	Stable locus	103	50	Available
Vitex agnus-castusViticoideae · Vitex	Stable locus	102	50	No matrix
Salvia divinorumNepetoideae · Salvia	Stable locus	101	50	No matrix
Salvia hispanicaNepetoideae · Salvia	Stable locus	100	50	No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex	Stable locus	98	50	No matrix
Ajuga reptansAjugoideae · Ajuga	Stable locus	97	50	No matrix
Glechoma longitubaNepetoideae · Glechoma	Stable locus	97	50	No matrix
Lavandula angustifoliaNepetoideae · Lavandula	Stable locus	97	50	No matrix
Stachys officinalisLamioideae · Stachys	Stable locus	97	50	No matrix
Ocimum tenuiflorumNepetoideae · Ocimum	Stable locus	96	50	No matrix
Thymus vulgarisNepetoideae · Thymus	Stable locus	95	50	No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia	Stable locus	93	50	No matrix
Ajuga decumbensAjugoideae · Ajuga	Stable locus	91	50	No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa	Stable locus	91	50	No matrix
Cornutia pyramidataPremnoideae · Cornutia	Stable locus	91	50	No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera	Stable locus	90	50	No matrix
Congea tomentosaSymphorematoideae · Congea	Stable locus	88	50	No matrix
Isodon lophanthoidesNepetoideae · Isodon	Stable locus	87	50	No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum	Stable locus	85	50	No matrix
Glechoma hederaceaNepetoideae · Glechoma	Stable locus	84	50	No matrix
Monarda didymaNepetoideae · Monarda	Stable locus	84	50	No matrix
Origanum majoranaNepetoideae · Origanum	Stable locus	84	50	No matrix
Prunella vulgarisNepetoideae · Prunella	Stable locus	84	50	No matrix
Clinopodium gracileNepetoideae · Clinopodium	Stable locus	83	50	No matrix
Leonotis leonurusLamioideae · Leonotis	Stable locus	83	50	No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia	Stable locus	82	50	No matrix
Mentha spicataNepetoideae · Mentha	Stable locus	81	50	No matrix
Hyptis suaveolensNepetoideae · Hyptis	Stable locus	80	50	No matrix
Isodon serraNepetoideae · Isodon	Stable locus	80	50	No matrix
Origanum vulgareNepetoideae · Origanum	Stable locus	80	50	No matrix
Melissa officinalisNepetoideae · Melissa	Stable locus	79	50	No matrix
Mosla soochowensisNepetoideae · Mosla	Stable locus	79	50	No matrix
Leonurus japonicusLamioideae · Leonurus	Stable locus	78	50	No matrix
Premna microphyllaPremnoideae · Premna	Stable locus	78	50	No matrix
Lycopus americanusNepetoideae · Lycopus	Stable locus	75	50	No matrix
Mosla chinensisNepetoideae · Mosla	Stable locus	74	50	No matrix
Salvia officinalisNepetoideae · Salvia	Stable locus	74	50	No matrix
Lamium albumLamioideae · Lamium	Stable locus	73	50	No matrix
Leonurus sibiricusLamioideae · Leonurus	Stable locus	73	50	No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria	Stable locus	73	50	No matrix
Scutellaria barbataScutellarioideae · Scutellaria	Stable locus	72	50	No matrix
Leonurus cardiacaLamioideae · Leonurus	Stable locus	71	50	No matrix
Salvia miltiorrhizaNepetoideae · Salvia	Stable locus	71	50	Available
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum	Stable locus	70	50	No matrix
Gmelina philippensisPremnoideae · Gmelina	Stable locus	70	50	No matrix
Mentha x piperitaNepetoideae · Mentha	Stable locus	69	50	No matrix
Salvia bowleyanaNepetoideae · Salvia	Stable locus	69	50	No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta	Stable locus	69	50	No matrix
Agastache rugosaNepetoideae · Agastache	Stable locus	68	50	No matrix
Marmoritis complanataNepetoideae · Marmoritis	Stable locus	67	50	No matrix
Thymus quinquecostatusNepetoideae · Thymus	Stable locus	67	50	No matrix
Perilla citriodoraNepetoideae · Perilla	Stable locus	65	50	No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla	Stable locus	65	50	No matrix
Agastache foeniculumNepetoideae · Agastache	Stable locus	64	50	No matrix
Mentha longifoliaNepetoideae · Mentha	Stable locus	60	50	Available
Westringia fruticosaProstantheroideae · Westringia	Stable locus	58	50	No matrix
Salvia sclareaNepetoideae · Salvia	Stable locus	38	38	No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Candidate ID	Species	Pathway / family	Evidence	Confidence	Identity	HMM score
Smil00G0020100.1.v1.484	Salvia miltiorrhiza	Alkaloid · `STR`	blast+hmm	High	61.6%	112.9
Teucrium_chamaedrys__Tcha141889	Teucrium chamaedrys	Alkaloid · `STR`	blast+hmm	High	72.8%	112.9
521103.g1.t1	Ocimum basilicum	Alkaloid · `STR`	blast+hmm	High	58.2%	112.8
521105.g1.t1	Ocimum basilicum	Alkaloid · `STR`	blast+hmm	High	58.2%	112.8
BAPS_c39550_g1_i2_len_1276	Ballota pseudodictamnus	Alkaloid · `STR`	blast+hmm	High	63.8%	112.8
Sbai2C13T16.1	Scutellaria baicalensis	Alkaloid · `STR`	blast+hmm	High	56.1%	112.8
1590.g16.t1	Ocimum basilicum	Alkaloid · `STR`	blast+hmm	High	58.4%	112.7
Clgra_023309-T1	Clinopodium gracile	Alkaloid · `STR`	blast+hmm	High	51.9%	112.6
Pat_A18G157600.m1	Pogostemon cablin	Alkaloid · `STR`	blast+hmm	High	57.7%	112.6
Sbow02G0036130.1	Salvia bowleyana	Alkaloid · `STR`	blast+hmm	High	61.6%	112.6
evm.model.LG05.1990	Clinopodium barosmum	Alkaloid · `STR`	blast+hmm	High	58.0%	112.6
Lj9g21450.1	Leonurus japonicus	Alkaloid · `STR`	blast+hmm	High	57.6%	112.5
origanum_vulgare_256.g205.t1	Origanum vulgare	Alkaloid · `STR`	blast+hmm	High	54.4%	112.5
rna-gnl\|WGS:QIYW\|chr05_09744974_09746685.mrna1	Perilla citriodora	Alkaloid · `STR`	blast+hmm	High	60.2%	112.5
rna-gnl\|WGS:QIYW\|chr05_09744974_09746685.mrna1	Perilla frutescens var. hirtella	Alkaloid · `STR`	blast+hmm	High	60.2%	112.5
CAame01G0049870.v1.94	Callicarpa americana	Alkaloid · `STR`	blast+hmm	High	68.9%	112.4
GMPH_c20017_g1_i1_len_2368	Gmelina philippensis	Alkaloid · `STR`	blast+hmm	High	57.0%	112.4
g27134.t1	Hyssopus officinalis	Alkaloid · `STR`	blast+hmm	High	54.9%	112.4
MESP_c41681_g1_i1_len_1282	Mentha spicata	Alkaloid · `STR`	blast+hmm	High	61.9%	112.3
Sch000024338	Schizonepeta tenuifolia	Alkaloid · `STR`	blast+hmm	High	59.7%	112.3
Teucrium_chamaedrys__Tcha183921	Teucrium chamaedrys	Alkaloid · `STR`	blast+hmm	High	67.1%	112.2
MODI_c40148_g1_i2_len_1438	Monarda didyma	Alkaloid · `STR`	blast+hmm	High	62.1%	112.1
PHFR_c69198_g5_i1_len_1446	Phlomis fruticosa	Alkaloid · `STR`	blast+hmm	High	59.3%	112.1
evm.model.chr7.172	Prunella vulgaris	Alkaloid · `STR`	blast+hmm	High	62.3%	112.0
Clgra_011438-T1	Clinopodium gracile	Alkaloid · `STR`	blast+hmm	High	59.0%	111.9
GMPH_c60271_g1_i1_len_1370	Gmelina philippensis	Alkaloid · `STR`	blast+hmm	High	61.2%	111.9
KAL8549994.1	Phlomoides rotata	Alkaloid · `STR`	blast+hmm	High	63.2%	111.9
Ms_c004g02279.1	Mosla soochowensis	Alkaloid · `STR`	blast+hmm	High	60.8%	111.9
TECA_c33800_g1_i1_len_1470	Teucrium canadense	Alkaloid · `STR`	blast+hmm	High	56.3%	111.8
Smil02G0025470.1.v1.484	Salvia miltiorrhiza	Alkaloid · `STR`	blast+hmm	High	53.9%	111.7
GWHPBJVA008066	Thymus quinquecostatus	Alkaloid · `STR`	blast+hmm	High	58.3%	111.6
1899.g13.t1	Ocimum basilicum	Alkaloid · `STR`	blast+hmm	High	54.9%	111.5
Pat_A15G025500.m1	Pogostemon cablin	Alkaloid · `STR`	blast+hmm	High	58.5%	111.5
AG34_scaffold3_07310T	Agastache rugosa	Alkaloid · `STR`	blast+hmm	High	61.0%	111.4
AGFO_c12973_g1_i1_len_1157	Agastache foeniculum	Alkaloid · `STR`	blast+hmm	High	60.7%	111.4
Mlonscaffold_8_length_368420820178660.1.v1.326	Mentha longifolia	Alkaloid · `STR`	blast+hmm	High	58.2%	111.3
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_11.289.mRNA1	Stenogyne calaminthoides	Alkaloid · `STR`	blast+hmm	High	57.0%	111.3
evm.model.LG12.809	Clinopodium barosmum	Alkaloid · `STR`	blast+hmm	High	58.5%	111.3
origanum_vulgare_1089.g19.t1	Origanum vulgare	Alkaloid · `STR`	blast+hmm	High	60.0%	111.3
MAVU_c31336_g1_i1_len_2558	Marrubium vulgare	Alkaloid · `STR`	blast+hmm	High	57.4%	111.2
evm.model.ptg000002l.1640	Isodon serra	Alkaloid · `STR`	blast+hmm	High	61.0%	111.2
ocimum_sanctum_Ote100134250061	Ocimum tenuiflorum	Alkaloid · `STR`	blast+hmm	High	56.0%	111.2
origanum_vulgare_245.g34.t1	Origanum vulgare	Alkaloid · `STR`	blast+hmm	High	58.7%	111.2
GWHPBJVA009576	Thymus quinquecostatus	Alkaloid · `STR`	blast+hmm	High	59.7%	111.1
375625.g2.t1	Ocimum basilicum	Alkaloid · `STR`	blast+hmm	High	57.9%	111.0
BAPS_c41456_g1_i1_len_2533	Ballota pseudodictamnus	Alkaloid · `STR`	blast+hmm	High	57.8%	111.0
LAAL_c32960_g1_i1_len_1464	Lamium album	Alkaloid · `STR`	blast+hmm	High	65.0%	111.0
Pat_B27G109700.m1	Pogostemon cablin	Alkaloid · `STR`	blast+hmm	High	61.7%	110.9
Pat_B27G109700.m2	Pogostemon cablin	Alkaloid · `STR`	blast+hmm	High	61.7%	110.9
Pat_B27G109700.m3	Pogostemon cablin	Alkaloid · `STR`	blast+hmm	High	61.7%	110.9