Pathway-family scientific record

`STR`

STR enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidates Compare species CSV

Stable locus plantsmeAlkaloid-related biosynthesis

Public candidate IDs: 3,988
Species with candidates: 80
Species with assignments: 80
Source assignments: 8,230
Gene-tree candidates: 0
Motif candidates: 0

Evidence profile

Available evidence layers

◆Candidate identifiers3,988 public species-linked identifiers can be inspected.

GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.

MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.

100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta: Not calculated
Prevalence delta: Not calculated
Comparable source: PlantSME family assignments
Comparable source count: 8,230
Public candidate count: 3,988
Evidence mode: plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

Species	Evidence state	Source count	Candidate IDs	Expression
Teucrium chamaedrysAjugoideae · Teucrium	Stable locus	372	50	No matrix
Pogostemon cablinLamioideae · Pogostemon	Stable locus	348	50	Available
Callicarpa americanaCallicarpoideae · Callicarpa	Stable locus	225	50	No matrix
Nepeta catariaNepetoideae · Nepeta	Stable locus	217	50	Available
Teucrium marumAjugoideae · Teucrium	Stable locus	199	50	No matrix
Salvia splendensNepetoideae · Salvia	Stable locus	176	50	No matrix
Ocimum basilicumNepetoideae · Ocimum	Stable locus	163	50	Available
Hyssopus officinalisNepetoideae · Hyssopus	Stable locus	160	50	No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne	Stable locus	159	50	No matrix
Elsholtzia splendensNepetoideae · Elsholtzia	Stable locus	154	50	No matrix
Nepeta mussiniiNepetoideae · Nepeta	Stable locus	141	50	Available
Phlomoides rotataLamioideae · Phlomoides	Stable locus	131	50	No matrix
Salvia rosmarinusNepetoideae · Salvia	Stable locus	127	50	Available
Dracocephalum rupestreNepetoideae · Dracocephalum	Stable locus	115	50	No matrix
Phlomis fruticosaLamioideae · Phlomis	Stable locus	115	50	No matrix
Ballota pseudodictamnusLamioideae · Ballota	Stable locus	114	50	No matrix
Perilla frutescensNepetoideae · Perilla	Stable locus	111	50	No matrix
Rotheca myricoidesAjugoideae · Rotheca	Stable locus	108	50	No matrix
Collinsonia canadensisNepetoideae · Collinsonia	Stable locus	106	50	No matrix
Clinopodium barosmumNepetoideae · Clinopodium	Stable locus	105	50	No matrix
Marrubium vulgareLamioideae · Marrubium	Stable locus	104	50	No matrix
Teucrium canadenseAjugoideae · Teucrium	Stable locus	104	50	No matrix
Plectranthus barbatusNepetoideae · Plectranthus	Stable locus	103	50	No matrix
Tectona grandisTectonoideae · Tectona	Stable locus	103	50	Available
Vitex agnus-castusViticoideae · Vitex	Stable locus	102	50	No matrix
Salvia divinorumNepetoideae · Salvia	Stable locus	101	50	No matrix
Salvia hispanicaNepetoideae · Salvia	Stable locus	100	50	No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex	Stable locus	98	50	No matrix
Ajuga reptansAjugoideae · Ajuga	Stable locus	97	50	No matrix
Glechoma longitubaNepetoideae · Glechoma	Stable locus	97	50	No matrix
Lavandula angustifoliaNepetoideae · Lavandula	Stable locus	97	50	No matrix
Stachys officinalisLamioideae · Stachys	Stable locus	97	50	No matrix
Ocimum tenuiflorumNepetoideae · Ocimum	Stable locus	96	50	No matrix
Thymus vulgarisNepetoideae · Thymus	Stable locus	95	50	No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia	Stable locus	93	50	No matrix
Ajuga decumbensAjugoideae · Ajuga	Stable locus	91	50	No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa	Stable locus	91	50	No matrix
Cornutia pyramidataPremnoideae · Cornutia	Stable locus	91	50	No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera	Stable locus	90	50	No matrix
Congea tomentosaSymphorematoideae · Congea	Stable locus	88	50	No matrix
Isodon lophanthoidesNepetoideae · Isodon	Stable locus	87	50	No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum	Stable locus	85	50	No matrix
Glechoma hederaceaNepetoideae · Glechoma	Stable locus	84	50	No matrix
Monarda didymaNepetoideae · Monarda	Stable locus	84	50	No matrix
Origanum majoranaNepetoideae · Origanum	Stable locus	84	50	No matrix
Prunella vulgarisNepetoideae · Prunella	Stable locus	84	50	No matrix
Clinopodium gracileNepetoideae · Clinopodium	Stable locus	83	50	No matrix
Leonotis leonurusLamioideae · Leonotis	Stable locus	83	50	No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia	Stable locus	82	50	No matrix
Mentha spicataNepetoideae · Mentha	Stable locus	81	50	No matrix
Hyptis suaveolensNepetoideae · Hyptis	Stable locus	80	50	No matrix
Isodon serraNepetoideae · Isodon	Stable locus	80	50	No matrix
Origanum vulgareNepetoideae · Origanum	Stable locus	80	50	No matrix
Melissa officinalisNepetoideae · Melissa	Stable locus	79	50	No matrix
Mosla soochowensisNepetoideae · Mosla	Stable locus	79	50	No matrix
Leonurus japonicusLamioideae · Leonurus	Stable locus	78	50	No matrix
Premna microphyllaPremnoideae · Premna	Stable locus	78	50	No matrix
Lycopus americanusNepetoideae · Lycopus	Stable locus	75	50	No matrix
Mosla chinensisNepetoideae · Mosla	Stable locus	74	50	No matrix
Salvia officinalisNepetoideae · Salvia	Stable locus	74	50	No matrix
Lamium albumLamioideae · Lamium	Stable locus	73	50	No matrix
Leonurus sibiricusLamioideae · Leonurus	Stable locus	73	50	No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria	Stable locus	73	50	No matrix
Scutellaria barbataScutellarioideae · Scutellaria	Stable locus	72	50	No matrix
Leonurus cardiacaLamioideae · Leonurus	Stable locus	71	50	No matrix
Salvia miltiorrhizaNepetoideae · Salvia	Stable locus	71	50	Available
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum	Stable locus	70	50	No matrix
Gmelina philippensisPremnoideae · Gmelina	Stable locus	70	50	No matrix
Mentha x piperitaNepetoideae · Mentha	Stable locus	69	50	No matrix
Salvia bowleyanaNepetoideae · Salvia	Stable locus	69	50	No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta	Stable locus	69	50	No matrix
Agastache rugosaNepetoideae · Agastache	Stable locus	68	50	No matrix
Marmoritis complanataNepetoideae · Marmoritis	Stable locus	67	50	No matrix
Thymus quinquecostatusNepetoideae · Thymus	Stable locus	67	50	No matrix
Perilla citriodoraNepetoideae · Perilla	Stable locus	65	50	No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla	Stable locus	65	50	No matrix
Agastache foeniculumNepetoideae · Agastache	Stable locus	64	50	No matrix
Mentha longifoliaNepetoideae · Mentha	Stable locus	60	50	Available
Westringia fruticosaProstantheroideae · Westringia	Stable locus	58	50	No matrix
Salvia sclareaNepetoideae · Salvia	Stable locus	38	38	No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Candidate ID	Species	Pathway / family	Evidence	Confidence	Identity	HMM score
Teucrium_chamaedrys__Tcha42436	Teucrium chamaedrys	Alkaloid · `STR`	blast+hmm	High	80.3%	266.7
Teum.12G016400.3	Teucrium marum	Alkaloid · `STR`	blast+hmm	High	80.3%	266.7
KAL1557546.1	Salvia divinorum	Alkaloid · `STR`	blast+hmm	High	79.0%	265.8
THVU_c76669_g1_i1_len_1346	Thymus vulgaris	Alkaloid · `STR`	blast+hmm	High	78.8%	265.8
ORMA_c50621_g1_i1_len_1689	Origanum majorana	Alkaloid · `STR`	blast+hmm	High	79.5%	265.7
CLBU_c46341_g1_i1_len_1636	Clerodendrum bungei	Alkaloid · `STR`	blast+hmm	High	81.8%	265.6
evm.model.Chr11.1691	Callicarpa nudiflora	Alkaloid · `STR`	blast+hmm	High	83.9%	265.4
PEBA_c39068_g1_i1_len_1638	Petraeovitex bambusetorium	Alkaloid · `STR`	blast+hmm	High	83.6%	265.2
Clgra_014630-T1	Clinopodium gracile	Alkaloid · `STR`	blast+hmm	High	80.1%	264.5
Mlonscaffold_6_length_375374740147820.1.v1.326	Mentha longifolia	Alkaloid · `STR`	blast+hmm	High	80.6%	264.4
STOF_c10113_g2_i1_len_1471	Stachys officinalis	Alkaloid · `STR`	blast+hmm	High	80.1%	264.4
TECA_c57320_g1_i1_len_1582	Teucrium canadense	Alkaloid · `STR`	blast+hmm	High	81.1%	264.3
LYAM_c68630_g1_i1_len_1929	Lycopus americanus	Alkaloid · `STR`	blast+hmm	High	80.1%	264.0
Teucrium_chamaedrys__Tcha14243	Teucrium chamaedrys	Alkaloid · `STR`	blast+hmm	High	80.1%	264.0
Teucrium_chamaedrys__Tcha200873	Teucrium chamaedrys	Alkaloid · `STR`	blast+hmm	High	80.1%	264.0
Roff3324860386600	Salvia rosmarinus	Alkaloid · `STR`	blast+hmm	High	78.5%	263.7
XP_041991385.1	Salvia splendens	Alkaloid · `STR`	blast+hmm	High	77.6%	263.7
origanum_vulgare_424.g21.t1	Origanum vulgare	Alkaloid · `STR`	blast+hmm	High	79.8%	263.7
SAOF_c34980_g1_i1_len_1696	Salvia officinalis	Alkaloid · `STR`	blast+hmm	High	78.5%	263.6
KAL8501030.1	Phlomoides rotata	Alkaloid · `STR`	blast+hmm	High	80.3%	263.5
PRLA_c65812_g1_i1_len_1579	Prostanthera lasianthos	Alkaloid · `STR`	blast+hmm	High	79.8%	263.5
Teucrium_chamaedrys__Tcha165367	Teucrium chamaedrys	Alkaloid · `STR`	blast+hmm	High	79.8%	263.5
Pat_A07G074300.m1	Pogostemon cablin	Alkaloid · `STR`	blast+hmm	High	81.8%	263.1
Pat_A07G074500.m1	Pogostemon cablin	Alkaloid · `STR`	blast+hmm	High	81.8%	263.1
AJRE_c41469_g1_i3_len_1575	Ajuga reptans	Alkaloid · `STR`	blast+hmm	High	81.6%	262.9
GlLon_012635-T1	Glechoma longituba	Alkaloid · `STR`	blast+hmm	High	78.0%	262.9
GLHE_c64286_g1_i1_len_1653	Glechoma hederacea	Alkaloid · `STR`	blast+hmm	High	78.0%	262.3
Pat_B08G073400.m1	Pogostemon cablin	Alkaloid · `STR`	blast+hmm	High	82.4%	261.9
COTO_c8086_g1_i1_len_1752	Congea tomentosa	Alkaloid · `STR`	blast+hmm	High	83.9%	261.7
BAPS_c36603_g2_i1_len_1661	Ballota pseudodictamnus	Alkaloid · `STR`	blast+hmm	High	80.3%	261.0
COCA_c64862_g1_i4_len_1734	Collinsonia canadensis	Alkaloid · `STR`	blast+hmm	High	78.5%	260.9
rna-gnl\|WGS:QFCC\|chr02_44084591_44086770.mrna1	Perilla frutescens	Alkaloid · `STR`	blast+hmm	High	77.8%	260.8
AGFO_c24366_g1_i1_len_1644	Agastache foeniculum	Alkaloid · `STR`	blast+hmm	High	78.8%	260.5
tectona_grandis_Tg14g01610.t1	Tectona grandis	Alkaloid · `STR`	blast+hmm	High	83.4%	260.4
Pat_B07G068600.m1	Pogostemon cablin	Alkaloid · `STR`	blast+hmm	High	81.6%	260.1
scutellaria_barbata_GWHPAOTP007891	Scutellaria barbata	Alkaloid · `STR`	blast+hmm	High	79.7%	259.8
1023.g135.t1	Ocimum basilicum	Alkaloid · `STR`	blast+hmm	High	75.7%	259.0
rna-gnl\|WGS:QIYW\|chr02_29728478_29730654.mrna1	Perilla citriodora	Alkaloid · `STR`	blast+hmm	High	77.3%	259.0
rna-gnl\|WGS:QIYW\|chr02_29728478_29730654.mrna1	Perilla frutescens var. hirtella	Alkaloid · `STR`	blast+hmm	High	77.3%	259.0
Ls7g06820.1	Leonurus sibiricus	Alkaloid · `STR`	blast+hmm	High	80.3%	258.7
PLBA_c42488_g1_i1_len_1876	Plectranthus barbatus	Alkaloid · `STR`	blast+hmm	High	79.0%	258.6
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_36.644.mRNA1	Stenogyne calaminthoides	Alkaloid · `STR`	blast+hmm	High	76.9%	258.6
Sbai3A98T123.1	Scutellaria baicalensis	Alkaloid · `STR`	blast+hmm	High	79.2%	258.3
Mc1g35310.1	Mosla chinensis	Alkaloid · `STR`	blast+hmm	High	78.0%	257.8
LECA_c33692_g3_i1_len_1680	Leonurus cardiaca	Alkaloid · `STR`	blast+hmm	High	81.1%	257.7
rna-gnl\|WGS:QFCC\|chr05_37275257_37277433.mrna1	Perilla frutescens	Alkaloid · `STR`	blast+hmm	High	77.6%	257.6
COTO_c42115_g1_i5_len_1595	Congea tomentosa	Alkaloid · `STR`	blast+hmm	High	57.7%	257.5
XP_041994809.1	Salvia splendens	Alkaloid · `STR`	blast+hmm	High	77.5%	257.5
XP_047942241.1	Salvia hispanica	Alkaloid · `STR`	blast+hmm	High	77.5%	257.0
TECA_c9271_g1_i1_len_1277	Teucrium canadense	Alkaloid · `STR`	blast+hmm	High	57.8%	256.6