Pathway-family scientific record

`STR`

STR enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidates Compare species CSV

Stable locus plantsmeAlkaloid-related biosynthesis

Public candidate IDs: 3,988
Species with candidates: 80
Species with assignments: 80
Source assignments: 8,230
Gene-tree candidates: 0
Motif candidates: 0

Evidence profile

Available evidence layers

◆Candidate identifiers3,988 public species-linked identifiers can be inspected.

GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.

MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.

100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta: Not calculated
Prevalence delta: Not calculated
Comparable source: PlantSME family assignments
Comparable source count: 8,230
Public candidate count: 3,988
Evidence mode: plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

Species	Evidence state	Source count	Candidate IDs	Expression
Teucrium chamaedrysAjugoideae · Teucrium	Stable locus	372	50	No matrix
Pogostemon cablinLamioideae · Pogostemon	Stable locus	348	50	Available
Callicarpa americanaCallicarpoideae · Callicarpa	Stable locus	225	50	No matrix
Nepeta catariaNepetoideae · Nepeta	Stable locus	217	50	Available
Teucrium marumAjugoideae · Teucrium	Stable locus	199	50	No matrix
Salvia splendensNepetoideae · Salvia	Stable locus	176	50	No matrix
Ocimum basilicumNepetoideae · Ocimum	Stable locus	163	50	Available
Hyssopus officinalisNepetoideae · Hyssopus	Stable locus	160	50	No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne	Stable locus	159	50	No matrix
Elsholtzia splendensNepetoideae · Elsholtzia	Stable locus	154	50	No matrix
Nepeta mussiniiNepetoideae · Nepeta	Stable locus	141	50	Available
Phlomoides rotataLamioideae · Phlomoides	Stable locus	131	50	No matrix
Salvia rosmarinusNepetoideae · Salvia	Stable locus	127	50	Available
Dracocephalum rupestreNepetoideae · Dracocephalum	Stable locus	115	50	No matrix
Phlomis fruticosaLamioideae · Phlomis	Stable locus	115	50	No matrix
Ballota pseudodictamnusLamioideae · Ballota	Stable locus	114	50	No matrix
Perilla frutescensNepetoideae · Perilla	Stable locus	111	50	No matrix
Rotheca myricoidesAjugoideae · Rotheca	Stable locus	108	50	No matrix
Collinsonia canadensisNepetoideae · Collinsonia	Stable locus	106	50	No matrix
Clinopodium barosmumNepetoideae · Clinopodium	Stable locus	105	50	No matrix
Marrubium vulgareLamioideae · Marrubium	Stable locus	104	50	No matrix
Teucrium canadenseAjugoideae · Teucrium	Stable locus	104	50	No matrix
Plectranthus barbatusNepetoideae · Plectranthus	Stable locus	103	50	No matrix
Tectona grandisTectonoideae · Tectona	Stable locus	103	50	Available
Vitex agnus-castusViticoideae · Vitex	Stable locus	102	50	No matrix
Salvia divinorumNepetoideae · Salvia	Stable locus	101	50	No matrix
Salvia hispanicaNepetoideae · Salvia	Stable locus	100	50	No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex	Stable locus	98	50	No matrix
Ajuga reptansAjugoideae · Ajuga	Stable locus	97	50	No matrix
Glechoma longitubaNepetoideae · Glechoma	Stable locus	97	50	No matrix
Lavandula angustifoliaNepetoideae · Lavandula	Stable locus	97	50	No matrix
Stachys officinalisLamioideae · Stachys	Stable locus	97	50	No matrix
Ocimum tenuiflorumNepetoideae · Ocimum	Stable locus	96	50	No matrix
Thymus vulgarisNepetoideae · Thymus	Stable locus	95	50	No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia	Stable locus	93	50	No matrix
Ajuga decumbensAjugoideae · Ajuga	Stable locus	91	50	No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa	Stable locus	91	50	No matrix
Cornutia pyramidataPremnoideae · Cornutia	Stable locus	91	50	No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera	Stable locus	90	50	No matrix
Congea tomentosaSymphorematoideae · Congea	Stable locus	88	50	No matrix
Isodon lophanthoidesNepetoideae · Isodon	Stable locus	87	50	No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum	Stable locus	85	50	No matrix
Glechoma hederaceaNepetoideae · Glechoma	Stable locus	84	50	No matrix
Monarda didymaNepetoideae · Monarda	Stable locus	84	50	No matrix
Origanum majoranaNepetoideae · Origanum	Stable locus	84	50	No matrix
Prunella vulgarisNepetoideae · Prunella	Stable locus	84	50	No matrix
Clinopodium gracileNepetoideae · Clinopodium	Stable locus	83	50	No matrix
Leonotis leonurusLamioideae · Leonotis	Stable locus	83	50	No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia	Stable locus	82	50	No matrix
Mentha spicataNepetoideae · Mentha	Stable locus	81	50	No matrix
Hyptis suaveolensNepetoideae · Hyptis	Stable locus	80	50	No matrix
Isodon serraNepetoideae · Isodon	Stable locus	80	50	No matrix
Origanum vulgareNepetoideae · Origanum	Stable locus	80	50	No matrix
Melissa officinalisNepetoideae · Melissa	Stable locus	79	50	No matrix
Mosla soochowensisNepetoideae · Mosla	Stable locus	79	50	No matrix
Leonurus japonicusLamioideae · Leonurus	Stable locus	78	50	No matrix
Premna microphyllaPremnoideae · Premna	Stable locus	78	50	No matrix
Lycopus americanusNepetoideae · Lycopus	Stable locus	75	50	No matrix
Mosla chinensisNepetoideae · Mosla	Stable locus	74	50	No matrix
Salvia officinalisNepetoideae · Salvia	Stable locus	74	50	No matrix
Lamium albumLamioideae · Lamium	Stable locus	73	50	No matrix
Leonurus sibiricusLamioideae · Leonurus	Stable locus	73	50	No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria	Stable locus	73	50	No matrix
Scutellaria barbataScutellarioideae · Scutellaria	Stable locus	72	50	No matrix
Leonurus cardiacaLamioideae · Leonurus	Stable locus	71	50	No matrix
Salvia miltiorrhizaNepetoideae · Salvia	Stable locus	71	50	Available
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum	Stable locus	70	50	No matrix
Gmelina philippensisPremnoideae · Gmelina	Stable locus	70	50	No matrix
Mentha x piperitaNepetoideae · Mentha	Stable locus	69	50	No matrix
Salvia bowleyanaNepetoideae · Salvia	Stable locus	69	50	No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta	Stable locus	69	50	No matrix
Agastache rugosaNepetoideae · Agastache	Stable locus	68	50	No matrix
Marmoritis complanataNepetoideae · Marmoritis	Stable locus	67	50	No matrix
Thymus quinquecostatusNepetoideae · Thymus	Stable locus	67	50	No matrix
Perilla citriodoraNepetoideae · Perilla	Stable locus	65	50	No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla	Stable locus	65	50	No matrix
Agastache foeniculumNepetoideae · Agastache	Stable locus	64	50	No matrix
Mentha longifoliaNepetoideae · Mentha	Stable locus	60	50	Available
Westringia fruticosaProstantheroideae · Westringia	Stable locus	58	50	No matrix
Salvia sclareaNepetoideae · Salvia	Stable locus	38	38	No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Candidate ID	Species	Pathway / family	Evidence	Confidence	Identity	HMM score
PRMI_c49328_g1_i1_len_865	Premna microphylla	Alkaloid · `STR`	blast+hmm	Medium	46.2%	12.3
LAAN_c107831_g1_i1_len_395	Lavandula angustifolia	Alkaloid · `STR`	blast+hmm	Medium	81.3%	12.2
PEAT_c59532_g1_i1_len_323	Perovskia atriplicifolia	Alkaloid · `STR`	blast+hmm	Medium	39.8%	12.2
LECA_c4469_g1_i1_len_1426	Leonurus cardiaca	Alkaloid · `STR`	blast+hmm	Medium	52.0%	11.9
Smil00G0005470.1.v1.484	Salvia miltiorrhiza	Alkaloid · `STR`	blast+hmm	Medium	42.4%	11.9
GlLon_006938-T1	Glechoma longituba	Alkaloid · `STR`	blast+hmm	Medium	46.4%	11.8
MESP_c22008_g1_i4_len_2278	Mentha spicata	Alkaloid · `STR`	blast+hmm	Medium	52.0%	11.8
AJRE_c6576_g1_i1_len_891	Ajuga reptans	Alkaloid · `STR`	blast+hmm	Medium	63.3%	11.6
COPY_c39089_g2_i1_len_543	Cornutia pyramidata	Alkaloid · `STR`	blast+hmm	Medium	73.1%	11.5
PRMI_c11731_g1_i1_len_460	Premna microphylla	Alkaloid · `STR`	blast+hmm	Medium	74.7%	11.4
TECA_c71719_g1_i1_len_451	Teucrium canadense	Alkaloid · `STR`	blast+hmm	Medium	45.9%	11.4
THVU_c35593_g1_i1_len_618	Thymus vulgaris	Alkaloid · `STR`	blast+hmm	Medium	54.4%	11.4
Mc3g05220.1	Mosla chinensis	Alkaloid · `STR`	blast+hmm	Medium	49.6%	11.3
ROMY_c14669_g1_i1_len_823	Rotheca myricoides	Alkaloid · `STR`	blast+hmm	Medium	53.7%	11.3
tectona_grandis_Tg12g01550.t1	Tectona grandis	Alkaloid · `STR`	blast+hmm	Medium	47.3%	11.3
PRLA_c56964_g1_i1_len_1224	Prostanthera lasianthos	Alkaloid · `STR`	blast+hmm	Medium	45.1%	11.2
STOF_c161941_g1_i1_len_443	Stachys officinalis	Alkaloid · `STR`	blast+hmm	Medium	45.9%	11.2
GWHPBJVA025279	Thymus quinquecostatus	Alkaloid · `STR`	blast+hmm	Medium	49.5%	11.0
Sbow01G0044600.1	Salvia bowleyana	Alkaloid · `STR`	blast+hmm	Medium	60.8%	11.0
ocimum_sanctum_Ote100260680081	Ocimum tenuiflorum	Alkaloid · `STR`	blast+hmm	Medium	42.1%	11.0
GLHE_c69468_g1_i2_len_683	Glechoma hederacea	Alkaloid · `STR`	blast+hmm	Medium	57.6%	10.9
COTO_c35506_g1_i2_len_1734	Congea tomentosa	Alkaloid · `STR`	blast+hmm	Medium	31.9%	10.8
LAAN_c49014_g1_i1_len_364	Lavandula angustifolia	Alkaloid · `STR`	blast+hmm	Medium	83.2%	10.8
COCA_c70299_g1_i1_len_3510	Collinsonia canadensis	Alkaloid · `STR`	blast+hmm	Medium	51.1%	10.7
CLBU_c2673_g1_i1_len_607	Clerodendrum bungei	Alkaloid · `STR`	blast+hmm	Medium	56.1%	10.6
COPY_c117729_g1_i1_len_548	Cornutia pyramidata	Alkaloid · `STR`	blast+hmm	Medium	71.2%	10.5
HYSU_c26306_g1_i1_len_331	Hyptis suaveolens	Alkaloid · `STR`	blast+hmm	Medium	90.9%	10.2
LECA_c68807_g1_i1_len_440	Leonurus cardiaca	Alkaloid · `STR`	blast+hmm	Medium	47.5%	10.2
MODI_c15652_g1_i1_len_884	Monarda didyma	Alkaloid · `STR`	blast+hmm	Medium	47.2%	10.2
MEPI_c55465_g2_i1_len_1331	Mentha x piperita	Alkaloid · `STR`	blast+hmm	Medium	47.2%	10.0
MESP_c62655_g1_i1_len_268	Mentha spicata	Alkaloid · `STR`	blast+hmm	Medium	69.3%	10.0
8:ILLG9G119.24m1	Isodon lophanthoides	Alkaloid · `STR`	blast+hmm	Medium	55.4%	9.9
MODI_c75811_g1_i1_len_320	Monarda didyma	Alkaloid · `STR`	blast+hmm	Medium	84.2%	9.9
Dru_4G0021400.2	Dracocephalum rupestre	Alkaloid · `STR`	blast+hmm	Medium	32.6%	9.5
CLBU_c44805_g1_i3_len_1328	Clerodendrum bungei	Alkaloid · `STR`	blast+hmm	Medium	44.2%	9.4
COCA_c69636_g2_i2_len_2933	Collinsonia canadensis	Alkaloid · `STR`	blast+hmm	Medium	50.3%	9.3
PRLA_c70962_g1_i1_len_2252	Prostanthera lasianthos	Alkaloid · `STR`	blast+hmm	Medium	39.9%	9.3
ROMY_c18323_g1_i1_len_464	Rotheca myricoides	Alkaloid · `STR`	blast+hmm	Medium	45.6%	9.0
ocimum_sanctum_Ote100196870071	Ocimum tenuiflorum	Alkaloid · `STR`	blast+hmm	Medium	47.1%	8.9
ocimum_sanctum_Ote100127880072	Ocimum tenuiflorum	Alkaloid · `STR`	blast+hmm	Medium	45.9%	8.5
ocimum_sanctum_Ote100160050092	Ocimum tenuiflorum	Alkaloid · `STR`	blast+hmm	Medium	36.9%	8.2
HYSU_c30858_g1_i1_len_1702	Hyptis suaveolens	Alkaloid · `STR`	blast+hmm	Medium	53.0%	8.1
THVU_c67861_g2_i1_len_1251	Thymus vulgaris	Alkaloid · `STR`	blast+hmm	Medium	43.8%	8.0
ocimum_sanctum_Ote100132460031	Ocimum tenuiflorum	Alkaloid · `STR`	blast+hmm	Medium	47.2%	8.0
ocimum_sanctum_Ote100132460101	Ocimum tenuiflorum	Alkaloid · `STR`	blast+hmm	Medium	47.2%	8.0
rna-gnl\|WGS:QIYW\|chr08_13548131_13554683.mrna1	Perilla citriodora	Alkaloid · `STR`	blast+hmm	Medium	40.7%	7.7
rna-gnl\|WGS:QIYW\|chr08_13548131_13554683.mrna1	Perilla frutescens var. hirtella	Alkaloid · `STR`	blast+hmm	Medium	40.7%	7.7
tectona_grandis_Tg12g01510.t1	Tectona grandis	Alkaloid · `STR`	blast+hmm	Medium	49.6%	7.6
MACO_g7126.t1	Marmoritis complanata	Alkaloid · `STR`	blast+hmm	Medium	42.0%	7.2
Dru_1G0010150.1	Dracocephalum rupestre	Alkaloid · `STR`	blast+hmm	Medium	41.8%	7.1