LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

TDC

TDC enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
296
Species with candidates
80
Species with assignments
80
Source assignments
296
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers296 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
296
Public candidate count
296
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 1313 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 1212 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 1010 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 99 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 99 Available
Phlomoides rotataLamioideae · Phlomoides Stable locus 99 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 77 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 77 Available
Salvia splendensNepetoideae · Salvia Stable locus 77 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 77 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 66 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 66 Available
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 55 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 55 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 55 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 55 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 55 Available
Ajuga decumbensAjugoideae · Ajuga Stable locus 44 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 44 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 44 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 44 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 44 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 44 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 44 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 44 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 44 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 44 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 44 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 44 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 44 Available
Stachys officinalisLamioideae · Stachys Stable locus 44 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 44 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 33 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 33 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 33 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 33 No matrix
Isodon serraNepetoideae · Isodon Stable locus 33 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 33 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 33 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 33 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 33 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 33 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 33 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 33 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 33 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 33 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 33 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 33 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 33 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 33 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 33 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 33 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 33 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 22 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 22 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 22 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 22 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 22 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 22 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 22 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 22 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 22 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 22 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 22 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 22 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 22 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 22 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 22 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 22 Available
Teucrium canadenseAjugoideae · Teucrium Stable locus 22 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 22 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 22 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 11 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 11 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 11 No matrix
Lamium albumLamioideae · Lamium Stable locus 11 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 11 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 11 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 11 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
COPY_c8965_g1_i1_len_370
Cornutia pyramidataAlkaloid · TDCblast+hmm High 35.5%72.4
KAL8555801.1
Phlomoides rotataAlkaloid · TDCblast+hmm High 76.9%16.1
1040.g7.t1
Ocimum basilicumAlkaloid · TDCblast+hmm Medium 83.0%866.7
382680.g53.t1
Ocimum basilicumAlkaloid · TDCblast+hmm Medium 77.4%563.2
1040.g7.t1.1.5db15143
Ocimum basilicumAlkaloid · TDCblast+hmm Medium 85.3%419.3
PHFR_c78180_g1_i9_len_1340
Phlomis fruticosaAlkaloid · TDCblast+hmm Medium 80.5%52.0
Pat_A32G110400.m1
Pogostemon cablinAlkaloid · TDCblast+hmm Medium 81.3%46.4
1040.g7.t1.2.5db15143
Ocimum basilicumAlkaloid · TDCblast+hmm Medium 97.3%43.1
Roff5893180493290
Salvia rosmarinusAlkaloid · TDCblast+hmm Medium 43.0%41.5
Roff5893190493320
Salvia rosmarinusAlkaloid · TDCblast+hmm Medium 43.0%41.5
Es8A.G203800.t1
Elsholtzia splendensAlkaloid · TDCblast+hmm Medium 25.8%38.2
Pat_A08G151000.m1
Pogostemon cablinAlkaloid · TDCblast+hmm Medium 86.5%37.1
TECA_c32541_g2_i1_len_1857
Teucrium canadenseAlkaloid · TDCblast+hmm Medium 23.1%34.4
AJRE_c41355_g2_i1_len_2020
Ajuga reptansAlkaloid · TDCblast+hmm Medium 26.2%33.3
Pat_B23G030700.m1
Pogostemon cablinAlkaloid · TDCblast+hmm Medium 81.1%33.0
Roff3725320418470
Salvia rosmarinusAlkaloid · TDCblast+hmm Medium 23.0%32.0
Teucrium_chamaedrys__Tcha46229
Teucrium chamaedrysAlkaloid · TDCblast+hmm Medium 52.9%31.9
Pat_A11G053400.m1
Pogostemon cablinAlkaloid · TDCblast+hmm Medium 78.4%30.1
LELE_c17457_g1_i1_len_2151
Leonotis leonurusAlkaloid · TDCblast+hmm Medium 23.6%27.8
Mlonscaffold_4_length_442849540100800.1.v1.326
Mentha longifoliaAlkaloid · TDCblast+hmm Medium 28.6%25.7
Mlonscaffold_4_length_442849540100960.1.v1.326
Mentha longifoliaAlkaloid · TDCblast+hmm Medium 28.6%25.7
ocimum_sanctum_Ote100276500011
Ocimum tenuiflorumAlkaloid · TDCblast+hmm Medium 25.6%22.0
KAL8555837.1
Phlomoides rotataAlkaloid · TDCblast+hmm Medium 54.1%12.7
Ms_c114g00004.1
Mosla soochowensisAlkaloid · TDChmm Medium —39.6
HOSA_c91701_g1_i1_len_320
Holmskioldia sanguineaAlkaloid · TDChmm Medium —37.8
Clgra_035901-T1
Clinopodium gracileAlkaloid · TDChmm Medium —37.5
tectona_grandis_Tg09g09270.t1
Tectona grandisAlkaloid · TDChmm Medium —36.6
g22374.t1
Nepeta catariaAlkaloid · TDChmm Medium —36.5
COPY_c75944_g1_i1_len_1893
Cornutia pyramidataAlkaloid · TDChmm Medium —36.0
MODI_c32185_g1_i1_len_1233
Monarda didymaAlkaloid · TDChmm Medium —35.6
Teucrium_chamaedrys__Tcha75413
Teucrium chamaedrysAlkaloid · TDChmm Medium —35.2
g3175.t1
Nepeta mussiniiAlkaloid · TDChmm Medium —35.1
SAOF_c55371_g1_i1_len_1842
Salvia officinalisAlkaloid · TDChmm Medium —35.0
PLBA_c75506_g1_i1_len_1851
Plectranthus barbatusAlkaloid · TDChmm Medium —34.9
Teucrium_chamaedrys__Tcha54032
Teucrium chamaedrysAlkaloid · TDChmm Medium —34.8
ROMY_c79915_g2_i3_len_1867
Rotheca myricoidesAlkaloid · TDChmm Medium —34.7
origanum_vulgare_1032.g42.t1
Origanum vulgareAlkaloid · TDChmm Medium —34.7
Es6A.G260000.t1
Elsholtzia splendensAlkaloid · TDChmm Medium —34.6
Pat_A21G064900.m1
Pogostemon cablinAlkaloid · TDChmm Medium —34.6
Pat_A27G073000.m1
Pogostemon cablinAlkaloid · TDChmm Medium —34.6
550.g104.t1
Ocimum basilicumAlkaloid · TDChmm Medium —34.5
Es6B.G253700.t1
Elsholtzia splendensAlkaloid · TDChmm Medium —34.4
KAL1566740.1
Salvia divinorumAlkaloid · TDChmm Medium —34.4
Teucrium_chamaedrys__Tcha129043
Teucrium chamaedrysAlkaloid · TDChmm Medium —34.4
evm.model.chr7.127
Prunella vulgarisAlkaloid · TDChmm Medium —34.4
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_42.1768.mRNA1
Stenogyne calaminthoidesAlkaloid · TDChmm Medium —34.3
WEFR_c36934_g1_i1_len_1849
Westringia fruticosaAlkaloid · TDChmm Medium —34.3
22:ILLG12G71.128m1
Isodon lophanthoidesAlkaloid · TDChmm Medium —34.2
LAAN_c53216_g1_i1_len_1829
Lavandula angustifoliaAlkaloid · TDChmm Medium —34.2
PEAT_c41288_g3_i2_len_1826
Perovskia atriplicifoliaAlkaloid · TDChmm Medium —34.2