LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

TRI_TRII

TRI / TRII enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
4,000
Species with candidates
80
Species with assignments
80
Source assignments
26,789
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers4,000 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
26,789
Public candidate count
4,000
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 1,04450 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 1,00150 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 74050 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 70250 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 70050 Available
Teucrium marumAjugoideae · Teucrium Stable locus 62650 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 62450 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 46350 Available
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 45750 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 44050 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 41150 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 39150 Available
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 38750 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 38450 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 38250 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 38050 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 37450 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 37250 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 37250 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 36550 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 35950 Available
Thymus vulgarisNepetoideae · Thymus Stable locus 34550 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 34450 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 34150 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 34050 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 33950 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 33150 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 32950 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 32750 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 32350 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 31450 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 31450 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 31350 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 31150 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 30650 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 30650 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 30050 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 29650 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 29450 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 29350 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 29350 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 29050 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 29050 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 28950 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 28450 No matrix
Lamium albumLamioideae · Lamium Stable locus 28350 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 28150 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 27950 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 27750 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 27450 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 27350 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 26650 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 26650 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 26550 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 26350 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 26050 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 26050 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 25450 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 25350 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 25050 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 24850 No matrix
Isodon serraNepetoideae · Isodon Stable locus 24650 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 24550 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 24450 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 24150 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 23850 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 23650 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 23450 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 22750 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 22450 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 22250 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 22150 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 20850 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 20850 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 20850 Available
Leonurus sibiricusLamioideae · Leonurus Stable locus 20350 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 19950 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 17550 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 16750 Available
Salvia sclareaNepetoideae · Salvia Stable locus 10550 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Teucrium_chamaedrys__Tcha44304
Teucrium chamaedrysAlkaloid · TRI_TRIIhmm Medium —177.7
Teum.01G002640.1
Teucrium marumAlkaloid · TRI_TRIIhmm Medium —177.7
HOSA_c42873_g1_i1_len_1420
Holmskioldia sanguineaAlkaloid · TRI_TRIIhmm Medium —177.5
XP_047962936.1
Salvia hispanicaAlkaloid · TRI_TRIIhmm Medium —177.5
XP_047960735.1
Salvia hispanicaAlkaloid · TRI_TRIIhmm Medium —177.4
CAame17G0003740.v1.94
Callicarpa americanaAlkaloid · TRI_TRIIhmm Medium —177.3
Teucrium_chamaedrys__Tcha19203
Teucrium chamaedrysAlkaloid · TRI_TRIIhmm Medium —177.0
Teucrium_chamaedrys__Tcha97467
Teucrium chamaedrysAlkaloid · TRI_TRIIhmm Medium —177.0
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_32.559.mRNA1
Stenogyne calaminthoidesAlkaloid · TRI_TRIIhmm Medium —176.9
Teum.06G003320.1
Teucrium marumAlkaloid · TRI_TRIIhmm Medium —176.9
Teum.06G003510.1
Teucrium marumAlkaloid · TRI_TRIIhmm Medium —176.9
g43621.t1
Nepeta catariaAlkaloid · TRI_TRIIhmm Medium —176.9
g21528.t1
Nepeta mussiniiAlkaloid · TRI_TRIIhmm Medium —176.8
g21528.t1.1.5b2c7c7b
Nepeta mussiniiAlkaloid · TRI_TRIIhmm Medium —176.8
Smil01G0024440.1.v1.484
Salvia miltiorrhizaAlkaloid · TRI_TRIIhmm Medium —176.7
MEOF_c21163_g4_i2_len_2115
Melissa officinalisAlkaloid · TRI_TRIIhmm Medium —176.6
Mlonscaffold_8_length_368420820185950.1.v1.326
Mentha longifoliaAlkaloid · TRI_TRIIhmm Medium —176.6
Sbow01G0018450.1
Salvia bowleyanaAlkaloid · TRI_TRIIhmm Medium —176.6
Mlonscaffold_8_length_368420820186070.1.v1.326
Mentha longifoliaAlkaloid · TRI_TRIIhmm Medium —176.5
PLBA_c47014_g4_i2_len_2328
Plectranthus barbatusAlkaloid · TRI_TRIIhmm Medium —176.4
scutellaria_barbata_GWHPAOTP007696
Scutellaria barbataAlkaloid · TRI_TRIIhmm Medium —176.4
24:ILLG5G168.4m1
Isodon lophanthoidesAlkaloid · TRI_TRIIhmm Medium —176.3
GlLon_027880-T1
Glechoma longitubaAlkaloid · TRI_TRIIhmm Medium —176.3
LAAL_c35068_g1_i5_len_2121
Lamium albumAlkaloid · TRI_TRIIhmm Medium —176.2
COPY_c73842_g1_i4_len_2746
Cornutia pyramidataAlkaloid · TRI_TRIIhmm Medium —176.1
GMPH_c33480_g2_i6_len_3142
Gmelina philippensisAlkaloid · TRI_TRIIhmm Medium —176.0
Mc7g09480.1
Mosla chinensisAlkaloid · TRI_TRIIhmm Medium —176.0
Teum.S058090.1
Teucrium marumAlkaloid · TRI_TRIIhmm Medium —175.9
GlLon_017635-T1
Glechoma longitubaAlkaloid · TRI_TRIIhmm Medium —175.7
LAAL_c22389_g1_i2_len_2185
Lamium albumAlkaloid · TRI_TRIIhmm Medium —175.6
Teucrium_chamaedrys__Tcha44285
Teucrium chamaedrysAlkaloid · TRI_TRIIhmm Medium —175.6
GMPH_c35596_g1_i3_len_1356
Gmelina philippensisAlkaloid · TRI_TRIIhmm Medium —175.4
KAL1533458.1
Salvia divinorumAlkaloid · TRI_TRIIhmm Medium —175.4
Pat_A21G033700.m1
Pogostemon cablinAlkaloid · TRI_TRIIhmm Medium —175.4
Teum.S058090.2
Teucrium marumAlkaloid · TRI_TRIIhmm Medium —175.4
Teum.06G003290.1
Teucrium marumAlkaloid · TRI_TRIIhmm Medium —175.3
MEPI_c57224_g1_i5_len_2398
Mentha x piperitaAlkaloid · TRI_TRIIhmm Medium —175.2
Mlonscaffold_4_length_442849540117100.1.v1.326
Mentha longifoliaAlkaloid · TRI_TRIIhmm Medium —175.2
ROMY_c79779_g1_i4_len_2736
Rotheca myricoidesAlkaloid · TRI_TRIIhmm Medium —175.2
Sch000017618
Schizonepeta tenuifoliaAlkaloid · TRI_TRIIhmm Medium —175.1
Teucrium_chamaedrys__Tcha194881
Teucrium chamaedrysAlkaloid · TRI_TRIIhmm Medium —175.1
g16664.t1.1.5b2d4a23
Nepeta catariaAlkaloid · TRI_TRIIhmm Medium —175.1
g16664.t1.2.5b2d4a23
Nepeta catariaAlkaloid · TRI_TRIIhmm Medium —175.1
g46504.t1
Nepeta catariaAlkaloid · TRI_TRIIhmm Medium —175.1
Mc1g23570.1
Mosla chinensisAlkaloid · TRI_TRIIhmm Medium —175.0
Dru_1G0006490.1
Dracocephalum rupestreAlkaloid · TRI_TRIIhmm Medium —174.9
Es2A.G182300.t1
Elsholtzia splendensAlkaloid · TRI_TRIIhmm Medium —174.9
PEAT_c37254_g1_i1_len_1118
Perovskia atriplicifoliaAlkaloid · TRI_TRIIhmm Medium —174.9
PEBA_c45416_g1_i4_len_2278
Petraeovitex bambusetoriumAlkaloid · TRI_TRIIhmm Medium —174.9
Teum.06G003290.3
Teucrium marumAlkaloid · TRI_TRIIhmm Medium —174.9