LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

TRI_TRII

TRI / TRII enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
4,000
Species with candidates
80
Species with assignments
80
Source assignments
26,789
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers4,000 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
26,789
Public candidate count
4,000
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 1,04450 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 1,00150 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 74050 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 70250 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 70050 Available
Teucrium marumAjugoideae · Teucrium Stable locus 62650 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 62450 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 46350 Available
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 45750 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 44050 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 41150 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 39150 Available
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 38750 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 38450 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 38250 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 38050 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 37450 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 37250 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 37250 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 36550 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 35950 Available
Thymus vulgarisNepetoideae · Thymus Stable locus 34550 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 34450 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 34150 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 34050 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 33950 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 33150 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 32950 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 32750 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 32350 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 31450 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 31450 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 31350 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 31150 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 30650 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 30650 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 30050 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 29650 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 29450 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 29350 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 29350 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 29050 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 29050 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 28950 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 28450 No matrix
Lamium albumLamioideae · Lamium Stable locus 28350 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 28150 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 27950 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 27750 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 27450 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 27350 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 26650 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 26650 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 26550 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 26350 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 26050 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 26050 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 25450 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 25350 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 25050 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 24850 No matrix
Isodon serraNepetoideae · Isodon Stable locus 24650 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 24550 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 24450 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 24150 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 23850 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 23650 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 23450 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 22750 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 22450 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 22250 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 22150 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 20850 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 20850 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 20850 Available
Leonurus sibiricusLamioideae · Leonurus Stable locus 20350 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 19950 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 17550 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 16750 Available
Salvia sclareaNepetoideae · Salvia Stable locus 10550 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
PEBA_c1447_g1_i1_len_936
Petraeovitex bambusetoriumAlkaloid · TRI_TRIIhmm Medium —205.5
XP_047941450.1
Salvia hispanicaAlkaloid · TRI_TRIIhmm Medium —205.5
XP_047941449.1
Salvia hispanicaAlkaloid · TRI_TRIIhmm Medium —205.4
XP_047941448.1
Salvia hispanicaAlkaloid · TRI_TRIIhmm Medium —205.3
g25995.t1
Hyssopus officinalisAlkaloid · TRI_TRIIhmm Medium —205.0
rna-gnl|WGS:QFCC|chr18_17331833_17336378.mrna1
Perilla frutescensAlkaloid · TRI_TRIIhmm Medium —204.6
1560.g30.t1
Ocimum basilicumAlkaloid · TRI_TRIIhmm Medium —204.5
evm.model.LG12.780
Clinopodium barosmumAlkaloid · TRI_TRIIhmm Medium —204.5
CAame12G0024850.v1.94
Callicarpa americanaAlkaloid · TRI_TRIIhmm Medium —204.4
CAame12G0024860.v1.94
Callicarpa americanaAlkaloid · TRI_TRIIhmm Medium —204.4
Es6A.G267600.t2
Elsholtzia splendensAlkaloid · TRI_TRIIhmm Medium —204.1
PEAT_c43459_g1_i1_len_3681
Perovskia atriplicifoliaAlkaloid · TRI_TRIIhmm Medium —204.1
g22592.t1.3.5b43bdc3
Hyssopus officinalisAlkaloid · TRI_TRIIhmm Medium —204.1
g31041.t1
Nepeta catariaAlkaloid · TRI_TRIIhmm Medium —204.1
XP_041997272.1
Salvia splendensAlkaloid · TRI_TRIIhmm Medium —203.9
CAame12G0024870.v1.94
Callicarpa americanaAlkaloid · TRI_TRIIhmm Medium —203.5
XP_042042473.1
Salvia splendensAlkaloid · TRI_TRIIhmm Medium —203.5
KAL1541609.1
Salvia divinorumAlkaloid · TRI_TRIIhmm Medium —203.4
GlLon_022829-T1
Glechoma longitubaAlkaloid · TRI_TRIIhmm Medium —203.3
KAL1566852.1
Salvia divinorumAlkaloid · TRI_TRIIhmm Medium —203.3
LYAM_c27896_g1_i2_len_1258
Lycopus americanusAlkaloid · TRI_TRIIhmm Medium —203.2
Clgra_010240-T1
Clinopodium gracileAlkaloid · TRI_TRIIhmm Medium —202.9
GWHPBJVA015542
Thymus quinquecostatusAlkaloid · TRI_TRIIhmm Medium —202.7
XP_042012365.1
Salvia splendensAlkaloid · TRI_TRIIhmm Medium —202.0
rna-gnl|WGS:QFCC|chr11_04188495_04190576.mrna1
Perilla frutescensAlkaloid · TRI_TRIIhmm Medium —202.0
AGFO_c6352_g1_i2_len_1713
Agastache foeniculumAlkaloid · TRI_TRIIhmm Medium —201.8
Sch000020353
Schizonepeta tenuifoliaAlkaloid · TRI_TRIIhmm Medium —201.6
Smil06G0015580.1.v1.484
Salvia miltiorrhizaAlkaloid · TRI_TRIIhmm Medium —201.5
Clgra_014359-T1
Clinopodium gracileAlkaloid · TRI_TRIIhmm Medium —201.2
Mc_c07g00720.1
Mosla chinensisAlkaloid · TRI_TRIIhmm Medium —201.1
Pat_B03G045900.m1
Pogostemon cablinAlkaloid · TRI_TRIIhmm Medium —201.1
Pat_A04G052700.m1
Pogostemon cablinAlkaloid · TRI_TRIIhmm Medium —200.8
scutellaria_barbata_GWHPAOTP012877
Scutellaria barbataAlkaloid · TRI_TRIIhmm Medium —200.7
Es3A.G110300.t1
Elsholtzia splendensAlkaloid · TRI_TRIIhmm Medium —200.6
Es3B.G110100.t1
Elsholtzia splendensAlkaloid · TRI_TRIIhmm Medium —200.1
XP_047947608.1
Salvia hispanicaAlkaloid · TRI_TRIIhmm Medium —200.1
evm.model.Chr12.428
Callicarpa nudifloraAlkaloid · TRI_TRIIhmm Medium —200.0
tectona_grandis_Tg10g05160.t1
Tectona grandisAlkaloid · TRI_TRIIhmm Medium —200.0
Smil04G0030630.1.v1.484
Salvia miltiorrhizaAlkaloid · TRI_TRIIhmm Medium —199.9
MAVU_c30767_g2_i1_len_3022
Marrubium vulgareAlkaloid · TRI_TRIIhmm Medium —199.8
Roff24190318410
Salvia rosmarinusAlkaloid · TRI_TRIIhmm Medium —199.5
Pat_A06G067700.m1
Pogostemon cablinAlkaloid · TRI_TRIIhmm Medium —199.3
CAame16G0028820.v1.94
Callicarpa americanaAlkaloid · TRI_TRIIhmm Medium —199.2
g15843.t1
Salvia sclareaAlkaloid · TRI_TRIIhmm Medium —199.0
KAL1548855.1
Salvia divinorumAlkaloid · TRI_TRIIhmm Medium —198.7
g19234.t1
Nepeta mussiniiAlkaloid · TRI_TRIIhmm Medium —198.6
g41578.t1
Nepeta catariaAlkaloid · TRI_TRIIhmm Medium —198.2
Roff24190318420
Salvia rosmarinusAlkaloid · TRI_TRIIhmm Medium —198.1
Roff24450323880
Salvia rosmarinusAlkaloid · TRI_TRIIhmm Medium —198.0
Mlonscaffold_7_length_366213000157600.1.v1.326
Mentha longifoliaAlkaloid · TRI_TRIIhmm Medium —197.7