Pathway-family scientific record

TYDC_DDC

TYDC / DDC enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
54
Species with candidates
42
Species with assignments
42
Source assignments
54
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers54 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
54
Public candidate count
54
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 44 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 33 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 22 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 22 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 22 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 22 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 22 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 22 Available
Salvia splendensNepetoideae · Salvia Stable locus 22 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 11 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 11 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 11 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 11 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 11 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 11 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 11 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 11 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 11 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 11 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 11 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 11 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 11 No matrix
Isodon serraNepetoideae · Isodon Stable locus 11 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 11 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 11 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 11 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 11 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 11 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 11 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 11 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 11 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 11 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 11 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 11 Available
Salvia officinalisNepetoideae · Salvia Stable locus 11 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 11 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 11 Available
Teucrium canadenseAjugoideae · Teucrium Stable locus 11 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 11 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 11 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 11 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Pogostemon cablinAlkaloid · TYDC_DDCblast+hmm Medium 41.8%86.7
Pogostemon cablinAlkaloid · TYDC_DDCblast+hmm Medium 61.2%55.0
Teucrium chamaedrysAlkaloid · TYDC_DDCblast+hmm Medium 53.1%54.0
Holmskioldia sanguineaAlkaloid · TYDC_DDChmm Medium —56.7
Thymus quinquecostatusAlkaloid · TYDC_DDChmm Medium —38.6
Origanum majoranaAlkaloid · TYDC_DDChmm Medium —38.5
Origanum vulgareAlkaloid · TYDC_DDChmm Medium —38.5
Marmoritis complanataAlkaloid · TYDC_DDChmm Medium —38.0
Thymus vulgarisAlkaloid · TYDC_DDChmm Medium —37.9
Salvia splendensAlkaloid · TYDC_DDChmm Medium —37.7
Salvia splendensAlkaloid · TYDC_DDChmm Medium —37.5
Drepanocaryum sewerzowiiAlkaloid · TYDC_DDChmm Medium —37.4
Hyptis suaveolensAlkaloid · TYDC_DDChmm Medium —37.0
Ocimum basilicumAlkaloid · TYDC_DDChmm Medium —36.9
Salvia hispanicaAlkaloid · TYDC_DDChmm Medium —36.9
Ocimum basilicumAlkaloid · TYDC_DDChmm Medium —36.3
Dracocephalum rupestreAlkaloid · TYDC_DDChmm Medium —36.1
Clinopodium gracileAlkaloid · TYDC_DDChmm Medium —35.4
Prunella vulgarisAlkaloid · TYDC_DDChmm Medium —34.8
Mentha spicataAlkaloid · TYDC_DDChmm Medium —34.2
Salvia sclareaAlkaloid · TYDC_DDChmm Medium —34.2
Holmskioldia sanguineaAlkaloid · TYDC_DDChmm Medium —34.1
Salvia officinalisAlkaloid · TYDC_DDChmm Medium —34.1
Clinopodium barosmumAlkaloid · TYDC_DDChmm Medium —33.3
Glechoma hederaceaAlkaloid · TYDC_DDChmm Medium —33.0
Salvia divinorumAlkaloid · TYDC_DDChmm Medium —33.0
Teucrium chamaedrysAlkaloid · TYDC_DDChmm Medium —32.7
Hyssopus officinalisAlkaloid · TYDC_DDChmm Medium —32.4
Salvia miltiorrhizaAlkaloid · TYDC_DDChmm Medium —32.3
Teucrium canadenseAlkaloid · TYDC_DDChmm Medium —32.1
Ajuga reptansAlkaloid · TYDC_DDChmm Medium —32.0
Gmelina philippensisAlkaloid · TYDC_DDChmm Medium —32.0
Teucrium chamaedrysAlkaloid · TYDC_DDChmm Medium —31.8
Glechoma longitubaAlkaloid · TYDC_DDChmm Medium —31.5
Callicarpa nudifloraAlkaloid · TYDC_DDChmm Medium —31.5
Callicarpa americanaAlkaloid · TYDC_DDChmm Medium —30.9
Callicarpa americanaAlkaloid · TYDC_DDChmm Medium —30.8
Westringia fruticosaAlkaloid · TYDC_DDChmm Medium —30.8
Ajuga decumbensAlkaloid · TYDC_DDChmm Medium —30.5
Prostanthera lasianthosAlkaloid · TYDC_DDChmm Medium —30.4
Ajuga decumbensAlkaloid · TYDC_DDChmm Medium —30.4
Clerodendrum bungeiAlkaloid · TYDC_DDChmm Medium —28.7
Marmoritis complanataAlkaloid · TYDC_DDChmm Medium —28.3
Congea tomentosaAlkaloid · TYDC_DDChmm Medium —28.1
Phlomis fruticosaAlkaloid · TYDC_DDChmm Medium —27.7
Vitex agnus-castusAlkaloid · TYDC_DDChmm Medium —27.6
Tectona grandisAlkaloid · TYDC_DDChmm Medium —27.5
Agastache rugosaAlkaloid · TYDC_DDChmm Medium —26.0
Lycopus americanusAlkaloid · TYDC_DDChmm Medium —19.0
Mentha x piperitaAlkaloid · TYDC_DDChmm Medium —19.0