Traceable computational records

Pathway candidate records

Search 173,329 species-linked candidate identifiers. Confidence and evidence mode are preserved separately; no candidate is presented as biochemically validated.

Download records Evidence definitions

All candidates: 173,329
Gene-tree candidates: 238
Motif candidates: 1,287
High confidence: 67
Public species: 80
Stable modules: 105

Candidate catalogue

54 matching records

CSV

Candidate ID	Species	Pathway / family	Evidence	Confidence	Identity	HMM score
Pat_B12G016700.m1	Pogostemon cablin	Alkaloid · `TYDC_DDC`	blast+hmm	Medium	41.8%	86.7
Pat_A08G008100.m1	Pogostemon cablin	Alkaloid · `TYDC_DDC`	blast+hmm	Medium	61.2%	55.0
Teucrium_chamaedrys__Tcha78000	Teucrium chamaedrys	Alkaloid · `TYDC_DDC`	blast+hmm	Medium	53.1%	54.0
HOSA_c127944_g1_i1_len_276	Holmskioldia sanguinea	Alkaloid · `TYDC_DDC`	hmm	Medium	—	56.7
GWHPBJVA019013	Thymus quinquecostatus	Alkaloid · `TYDC_DDC`	hmm	Medium	—	38.6
ORMA_c37433_g1_i2_len_2047	Origanum majorana	Alkaloid · `TYDC_DDC`	hmm	Medium	—	38.5
origanum_vulgare_378.g10.t1	Origanum vulgare	Alkaloid · `TYDC_DDC`	hmm	Medium	—	38.5
MACO_g9954.t1	Marmoritis complanata	Alkaloid · `TYDC_DDC`	hmm	Medium	—	38.0
THVU_c70141_g1_i2_len_2083	Thymus vulgaris	Alkaloid · `TYDC_DDC`	hmm	Medium	—	37.9
XP_042058061.1	Salvia splendens	Alkaloid · `TYDC_DDC`	hmm	Medium	—	37.7
XP_042062092.1	Salvia splendens	Alkaloid · `TYDC_DDC`	hmm	Medium	—	37.5
DRSE_g16857.t1	Drepanocaryum sewerzowii	Alkaloid · `TYDC_DDC`	hmm	Medium	—	37.4
HYSU_c33966_g1_i3_len_1823	Hyptis suaveolens	Alkaloid · `TYDC_DDC`	hmm	Medium	—	37.0
228463.g1.t1.1.5db15210	Ocimum basilicum	Alkaloid · `TYDC_DDC`	hmm	Medium	—	36.9
XP_047972107.1	Salvia hispanica	Alkaloid · `TYDC_DDC`	hmm	Medium	—	36.9
228463.g1.t1	Ocimum basilicum	Alkaloid · `TYDC_DDC`	hmm	Medium	—	36.3
Dru_5G0027190.3	Dracocephalum rupestre	Alkaloid · `TYDC_DDC`	hmm	Medium	—	36.1
Clgra_017396-T1	Clinopodium gracile	Alkaloid · `TYDC_DDC`	hmm	Medium	—	35.4
evm.model.chr7.3473	Prunella vulgaris	Alkaloid · `TYDC_DDC`	hmm	Medium	—	34.8
MESP_c43119_g1_i1_len_1909	Mentha spicata	Alkaloid · `TYDC_DDC`	hmm	Medium	—	34.2
g5357.t1	Salvia sclarea	Alkaloid · `TYDC_DDC`	hmm	Medium	—	34.2
HOSA_c51920_g2_i1_len_1969	Holmskioldia sanguinea	Alkaloid · `TYDC_DDC`	hmm	Medium	—	34.1
SAOF_c15611_g1_i2_len_2013	Salvia officinalis	Alkaloid · `TYDC_DDC`	hmm	Medium	—	34.1
evm.model.LG01.2276	Clinopodium barosmum	Alkaloid · `TYDC_DDC`	hmm	Medium	—	33.3
GLHE_c62682_g1_i1_len_1997	Glechoma hederacea	Alkaloid · `TYDC_DDC`	hmm	Medium	—	33.0
KAL1565316.1	Salvia divinorum	Alkaloid · `TYDC_DDC`	hmm	Medium	—	33.0
Teucrium_chamaedrys__Tcha180369	Teucrium chamaedrys	Alkaloid · `TYDC_DDC`	hmm	Medium	—	32.7
g1564.t1.1.5b43bdbd	Hyssopus officinalis	Alkaloid · `TYDC_DDC`	hmm	Medium	—	32.4
Smil04G0017360.1.v1.484	Salvia miltiorrhiza	Alkaloid · `TYDC_DDC`	hmm	Medium	—	32.3
TECA_c14989_g1_i2_len_2052	Teucrium canadense	Alkaloid · `TYDC_DDC`	hmm	Medium	—	32.1
AJRE_c42822_g1_i1_len_2253	Ajuga reptans	Alkaloid · `TYDC_DDC`	hmm	Medium	—	32.0
GMPH_c32147_g1_i1_len_1914	Gmelina philippensis	Alkaloid · `TYDC_DDC`	hmm	Medium	—	32.0
Teucrium_chamaedrys__Tcha152823	Teucrium chamaedrys	Alkaloid · `TYDC_DDC`	hmm	Medium	—	31.8
GlLon_001855-T1	Glechoma longituba	Alkaloid · `TYDC_DDC`	hmm	Medium	—	31.5
evm.model.Chr12.884	Callicarpa nudiflora	Alkaloid · `TYDC_DDC`	hmm	Medium	—	31.5
CAame14G0026210.v1.94	Callicarpa americana	Alkaloid · `TYDC_DDC`	hmm	Medium	—	30.9
CAame14G0026220.v1.94	Callicarpa americana	Alkaloid · `TYDC_DDC`	hmm	Medium	—	30.8
WEFR_c37062_g1_i4_len_1928	Westringia fruticosa	Alkaloid · `TYDC_DDC`	hmm	Medium	—	30.8
g3703.t1	Ajuga decumbens	Alkaloid · `TYDC_DDC`	hmm	Medium	—	30.5
PRLA_c67511_g3_i6_len_1877	Prostanthera lasianthos	Alkaloid · `TYDC_DDC`	hmm	Medium	—	30.4
g3703.t2	Ajuga decumbens	Alkaloid · `TYDC_DDC`	hmm	Medium	—	30.4
CLBU_c42876_g1_i2_len_1835	Clerodendrum bungei	Alkaloid · `TYDC_DDC`	hmm	Medium	—	28.7
MACO_g22816.t1	Marmoritis complanata	Alkaloid · `TYDC_DDC`	hmm	Medium	—	28.3
COTO_c30246_g1_i1_len_1902	Congea tomentosa	Alkaloid · `TYDC_DDC`	hmm	Medium	—	28.1
PHFR_c72791_g1_i1_len_1996	Phlomis fruticosa	Alkaloid · `TYDC_DDC`	hmm	Medium	—	27.7
VIAG_c43987_g1_i3_len_2818	Vitex agnus-castus	Alkaloid · `TYDC_DDC`	hmm	Medium	—	27.6
tectona_grandis_Tg15g04030.t1	Tectona grandis	Alkaloid · `TYDC_DDC`	hmm	Medium	—	27.5
AG34_scaffold3_33890T	Agastache rugosa	Alkaloid · `TYDC_DDC`	hmm	Medium	—	26.0
LYAM_c20000_g2_i1_len_617	Lycopus americanus	Alkaloid · `TYDC_DDC`	hmm	Medium	—	19.0
MEPI_c53907_g1_i1_len_1104	Mentha x piperita	Alkaloid · `TYDC_DDC`	hmm	Medium	—	19.0