LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

CHI

Chalcone isomerase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeFlavonoid biosynthesis
Public candidate IDs
2,860
Species with candidates
80
Species with assignments
80
Source assignments
3,243
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers2,860 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
3,243
Public candidate count
2,860
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 16850 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 12950 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 10350 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 9650 Available
Salvia splendensNepetoideae · Salvia Stable locus 8550 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 6450 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 6150 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 5950 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 5850 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 5850 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 5250 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 5050 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 4949 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 4949 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 4848 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 4646 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 4545 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 4141 Available
Salvia bowleyanaNepetoideae · Salvia Stable locus 4141 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 4040 Available
Hyptis suaveolensNepetoideae · Hyptis Stable locus 3838 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 3838 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 3838 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 3737 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 3737 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 3737 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 3737 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 3636 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 3636 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 3636 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 3636 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 3535 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 3535 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 3535 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 3535 Available
Stachys officinalisLamioideae · Stachys Stable locus 3535 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 3434 No matrix
Isodon serraNepetoideae · Isodon Stable locus 3434 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 3434 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 3434 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 3434 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 3434 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 3434 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 3434 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 3333 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 3333 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 3333 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 3333 No matrix
Lamium albumLamioideae · Lamium Stable locus 3232 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 3232 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 3131 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 3131 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 3131 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 3131 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 3131 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 3131 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 3131 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 3131 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 3030 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 3030 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 3030 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 3030 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 3030 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 2929 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 2929 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 2929 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 2828 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 2828 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 2828 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 2727 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 2727 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 2727 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 2727 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 2727 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 2727 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 2727 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 2525 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 2424 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 2323 Available
Ajuga reptansAjugoideae · Ajuga Stable locus 2222 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
ORMA_c49821_g1_i1_len_1015
Origanum majoranaFlavonoid · CHIblast+hmm High 41.1%57.9
PRLA_c65031_g2_i3_len_2072
Prostanthera lasianthosFlavonoid · CHIblast+hmm High 38.4%57.8
MACO_g669.t1
Marmoritis complanataFlavonoid · CHIblast+hmm High 59.0%57.4
Teum.12G021280.2
Teucrium marumFlavonoid · CHIblast+hmm High 56.6%57.3
evm.model.chr12.36
Prunella vulgarisFlavonoid · CHIblast+hmm High 36.5%57.3
rna-gnl|WGS:QFCC|chr01_62320815_62322498.mrna1
Perilla frutescensFlavonoid · CHIblast+hmm High 54.4%57.3
COPY_c81820_g1_i1_len_1170
Cornutia pyramidataFlavonoid · CHIblast+hmm High 56.9%57.2
scutellaria_barbata_GWHPAOTP002062
Scutellaria barbataFlavonoid · CHIblast+hmm High 56.8%57.2
PLBA_c76019_g1_i1_len_1032
Plectranthus barbatusFlavonoid · CHIblast+hmm High 58.3%57.0
COTO_c38881_g1_i2_len_2089
Congea tomentosaFlavonoid · CHIblast+hmm High 45.4%56.9
Teucrium_chamaedrys__Tcha147498
Teucrium chamaedrysFlavonoid · CHIblast+hmm High 61.9%56.8
g27074.t1.3.5b2d4a2a
Nepeta catariaFlavonoid · CHIblast+hmm High 30.7%56.8
g27074.t1.4.5b2d4a2a
Nepeta catariaFlavonoid · CHIblast+hmm High 30.7%56.8
g27074.t1.7.5b2d4a2a
Nepeta catariaFlavonoid · CHIblast+hmm High 30.7%56.8
Clgra_023647-T1
Clinopodium gracileFlavonoid · CHIblast+hmm High 31.4%56.5
WEFR_c34074_g1_i2_len_1120
Westringia fruticosaFlavonoid · CHIblast+hmm High 56.4%56.3
evm.model.LG14.1402
Clinopodium barosmumFlavonoid · CHIblast+hmm High 31.8%56.3
g27074.t1
Nepeta catariaFlavonoid · CHIblast+hmm High 30.7%56.3
LECA_c25761_g1_i1_len_1994
Leonurus cardiacaFlavonoid · CHIblast+hmm High 43.0%56.0
5:ILLG10G78.10m1
Isodon lophanthoidesFlavonoid · CHIblast+hmm High 62.7%55.8
evm.model.ptg000005l.1072
Isodon serraFlavonoid · CHIblast+hmm High 62.7%55.8
PEAT_c31163_g1_i2_len_1013
Perovskia atriplicifoliaFlavonoid · CHIblast+hmm High 57.4%55.6
Roff21790291840
Salvia rosmarinusFlavonoid · CHIblast+hmm High 58.7%55.6
ocimum_sanctum_Ote238034490031
Ocimum tenuiflorumFlavonoid · CHIblast+hmm High 58.2%55.6
Teucrium_chamaedrys__Tcha82736
Teucrium chamaedrysFlavonoid · CHIblast+hmm High 57.6%55.1
Dru_2G0030270.1
Dracocephalum rupestreFlavonoid · CHIblast+hmm High 56.9%55.0
GWHPBJVA014826
Thymus quinquecostatusFlavonoid · CHIblast+hmm High 35.7%54.9
rna-gnl|WGS:QFCC|chr05_33807574_33809165.mrna1
Perilla frutescensFlavonoid · CHIblast+hmm High 55.5%54.3
rna-gnl|WGS:QIYW|chr02_33174269_33175860.mrna1
Perilla citriodoraFlavonoid · CHIblast+hmm High 55.5%54.3
rna-gnl|WGS:QIYW|chr02_33174269_33175860.mrna1
Perilla frutescens var. hirtellaFlavonoid · CHIblast+hmm High 55.5%54.3
GMPH_c60614_g1_i1_len_1194
Gmelina philippensisFlavonoid · CHIblast+hmm High 62.6%54.1
Teucrium_chamaedrys__Tcha108436
Teucrium chamaedrysFlavonoid · CHIblast+hmm High 54.3%54.0
Sbai4C3T10.1
Scutellaria baicalensisFlavonoid · CHIblast+hmm High 38.3%53.8
SAOF_c1067_g1_i2_len_1180
Salvia officinalisFlavonoid · CHIblast+hmm High 61.5%53.4
scutellaria_barbata_GWHPAOTP007683
Scutellaria barbataFlavonoid · CHIblast+hmm High 32.3%53.2
AJRE_c32589_g1_i1_len_1205
Ajuga reptansFlavonoid · CHIblast+hmm High 59.1%53.1
evm.model.LG06.1818
Clinopodium barosmumFlavonoid · CHIblast+hmm High 70.9%52.7
WEFR_c46208_g2_i2_len_2122
Westringia fruticosaFlavonoid · CHIblast+hmm High 40.0%52.5
Clgra_034941-T1
Clinopodium gracileFlavonoid · CHIblast+hmm High 52.7%51.8
g22323.t1
Ajuga decumbensFlavonoid · CHIblast+hmm High 57.9%51.6
382213.g38.t1
Ocimum basilicumFlavonoid · CHIblast+hmm High 56.6%51.4
STOF_c85805_g1_i1_len_467
Stachys officinalisFlavonoid · CHIblast+hmm High 54.7%51.3
559.g20.t1
Ocimum basilicumFlavonoid · CHIblast+hmm High 56.2%49.0
Sbai5C38T15.1
Scutellaria baicalensisFlavonoid · CHIblast+hmm High 48.4%47.5
g23611.t1
Nepeta mussiniiFlavonoid · CHIblast+hmm High 73.6%46.5
VIAG_c111011_g1_i1_len_341
Vitex agnus-castusFlavonoid · CHIblast+hmm High 60.3%45.9
HYSU_c21931_g1_i3_len_1140
Hyptis suaveolensFlavonoid · CHIblast+hmm High 53.8%45.4
STOF_c110901_g1_i1_len_540
Stachys officinalisFlavonoid · CHIblast+hmm High 60.2%44.1
Sbow01G0067800.1
Salvia bowleyanaFlavonoid · CHIblast+hmm High 56.3%43.9
ORMA_c43997_g1_i1_len_1270
Origanum majoranaFlavonoid · CHIblast+hmm High 73.4%42.3