LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

CHI

Chalcone isomerase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeFlavonoid biosynthesis
Public candidate IDs
2,860
Species with candidates
80
Species with assignments
80
Source assignments
3,243
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers2,860 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
3,243
Public candidate count
2,860
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 16850 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 12950 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 10350 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 9650 Available
Salvia splendensNepetoideae · Salvia Stable locus 8550 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 6450 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 6150 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 5950 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 5850 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 5850 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 5250 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 5050 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 4949 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 4949 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 4848 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 4646 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 4545 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 4141 Available
Salvia bowleyanaNepetoideae · Salvia Stable locus 4141 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 4040 Available
Hyptis suaveolensNepetoideae · Hyptis Stable locus 3838 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 3838 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 3838 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 3737 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 3737 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 3737 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 3737 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 3636 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 3636 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 3636 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 3636 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 3535 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 3535 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 3535 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 3535 Available
Stachys officinalisLamioideae · Stachys Stable locus 3535 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 3434 No matrix
Isodon serraNepetoideae · Isodon Stable locus 3434 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 3434 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 3434 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 3434 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 3434 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 3434 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 3434 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 3333 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 3333 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 3333 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 3333 No matrix
Lamium albumLamioideae · Lamium Stable locus 3232 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 3232 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 3131 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 3131 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 3131 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 3131 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 3131 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 3131 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 3131 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 3131 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 3030 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 3030 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 3030 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 3030 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 3030 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 2929 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 2929 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 2929 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 2828 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 2828 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 2828 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 2727 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 2727 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 2727 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 2727 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 2727 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 2727 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 2727 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 2525 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 2424 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 2323 Available
Ajuga reptansAjugoideae · Ajuga Stable locus 2222 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
origanum_vulgare_1084.g76.t1
Origanum vulgareFlavonoid · CHIblast+hmm High 55.8%105.0
Lj5g25810.1
Leonurus japonicusFlavonoid · CHIblast+hmm High 66.7%104.6
3:ILLG6G305.119m1
Isodon lophanthoidesFlavonoid · CHIblast+hmm High 71.4%104.5
Ls1g16720.1
Leonurus sibiricusFlavonoid · CHIblast+hmm High 59.3%104.2
Pat_A22G006500.m1
Pogostemon cablinFlavonoid · CHIblast+hmm High 60.8%104.2
GWHPBJVA026817
Thymus quinquecostatusFlavonoid · CHIblast+hmm High 56.8%104.1
LELE_c25959_g1_i1_len_1082
Leonotis leonurusFlavonoid · CHIblast+hmm High 71.3%104.1
Pat_A21G006300.m1
Pogostemon cablinFlavonoid · CHIblast+hmm High 60.3%104.1
g699.t1
Nepeta catariaFlavonoid · CHIblast+hmm High 59.4%103.9
scutellaria_barbata_GWHPAOTP018637
Scutellaria barbataFlavonoid · CHIblast+hmm High 71.0%103.9
375849.g14.t1
Ocimum basilicumFlavonoid · CHIblast+hmm High 64.4%103.7
HOSA_c48429_g3_i2_len_2773
Holmskioldia sanguineaFlavonoid · CHIblast+hmm High 71.5%103.7
evm.model.ptg000018l.532
Isodon serraFlavonoid · CHIblast+hmm High 61.5%103.7
g15343.t1
Salvia sclareaFlavonoid · CHIblast+hmm High 59.8%103.6
454.g100.t1
Ocimum basilicumFlavonoid · CHIblast+hmm High 64.8%103.5
Ls1g24420.1
Leonurus sibiricusFlavonoid · CHIblast+hmm High 67.2%103.4
evm.model.Chr16.1006
Callicarpa nudifloraFlavonoid · CHIblast+hmm High 68.6%103.2
GMPH_c33851_g1_i2_len_1104
Gmelina philippensisFlavonoid · CHIblast+hmm High 64.7%103.1
MEOF_c16404_g1_i1_len_1093
Melissa officinalisFlavonoid · CHIblast+hmm High 68.2%103.0
Pat_B11G101500.m3
Pogostemon cablinFlavonoid · CHIblast+hmm High 68.0%102.9
TECA_c8944_g1_i1_len_1060
Teucrium canadenseFlavonoid · CHIblast+hmm High 70.2%102.9
Pat_B11G101500.m1
Pogostemon cablinFlavonoid · CHIblast+hmm High 68.2%102.7
Pat_B11G101500.m2
Pogostemon cablinFlavonoid · CHIblast+hmm High 68.2%102.7
evm.model.LG23.1185
Clinopodium barosmumFlavonoid · CHIblast+hmm High 57.8%102.7
Ms_c005g01337.1
Mosla soochowensisFlavonoid · CHIblast+hmm High 75.5%102.6
DRSE_g21648.t1
Drepanocaryum sewerzowiiFlavonoid · CHIblast+hmm High 58.3%102.5
KAL1563797.1
Salvia divinorumFlavonoid · CHIblast+hmm High 66.9%102.4
ROMY_c91933_g1_i1_len_722
Rotheca myricoidesFlavonoid · CHIblast+hmm High 60.1%102.4
Lj5g18490.1
Leonurus japonicusFlavonoid · CHIblast+hmm High 59.1%102.2
PLBA_c51939_g1_i1_len_1133
Plectranthus barbatusFlavonoid · CHIblast+hmm High 69.7%102.2
DRSE_g16029.t1
Drepanocaryum sewerzowiiFlavonoid · CHIblast+hmm High 68.5%102.1
Sch000019459
Schizonepeta tenuifoliaFlavonoid · CHIblast+hmm High 57.3%102.0
ocimum_sanctum_Ote100244380001
Ocimum tenuiflorumFlavonoid · CHIblast+hmm High 71.6%101.9
XP_042060669.1
Salvia splendensFlavonoid · CHIblast+hmm High 69.6%101.7
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_31.22.mRNA1
Stenogyne calaminthoidesFlavonoid · CHIblast+hmm High 58.3%101.6
g12483.t1
Ajuga decumbensFlavonoid · CHIblast+hmm High 67.2%101.6
g12495.t1
Hyssopus officinalisFlavonoid · CHIblast+hmm High 59.8%101.5
Es1B.G112600.t1
Elsholtzia splendensFlavonoid · CHIblast+hmm High 67.2%101.4
PEBA_c38411_g1_i1_len_1161
Petraeovitex bambusetoriumFlavonoid · CHIblast+hmm High 65.6%101.2
g11442.t1
Salvia sclareaFlavonoid · CHIblast+hmm High 64.0%101.2
Pat_B21G005900.m1
Pogostemon cablinFlavonoid · CHIblast+hmm High 60.3%100.9
COTO_c20040_g1_i1_len_1481
Congea tomentosaFlavonoid · CHIblast+hmm High 71.4%100.8
Mc2g28640.1
Mosla chinensisFlavonoid · CHIblast+hmm High 74.9%100.8
CLBU_c31525_g1_i1_len_1102
Clerodendrum bungeiFlavonoid · CHIblast+hmm High 72.1%100.7
Es1A.G111500.t1
Elsholtzia splendensFlavonoid · CHIblast+hmm High 67.2%100.7
GlLon_031679-T1
Glechoma longitubaFlavonoid · CHIblast+hmm High 70.0%100.7
378743.g14.t1
Ocimum basilicumFlavonoid · CHIblast+hmm High 73.4%100.6
AJRE_c44226_g2_i6_len_2080
Ajuga reptansFlavonoid · CHIblast+hmm High 67.6%100.5
Pat_B22G006700.m1
Pogostemon cablinFlavonoid · CHIblast+hmm High 59.8%100.3
GLHE_c57713_g1_i1_len_1494
Glechoma hederaceaFlavonoid · CHIblast+hmm High 67.6%99.9