LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

PAL

Phenylalanine ammonia-lyase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeFlavonoid biosynthesis
Public candidate IDs
2,048
Species with candidates
80
Species with assignments
80
Source assignments
3,051
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers2,048 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
0.01 · higher in Lamiaceae
Prevalence delta
0
Comparable source
PlantSME family assignments
Comparable source count
3,051
Public candidate count
2,048
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 41850 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 22850 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 19650 Available
Rotheca myricoidesAjugoideae · Rotheca Stable locus 14950 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 9850 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 8950 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 8950 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 8550 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 7550 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 6450 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 5950 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 5350 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 4747 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 4444 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 4343 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 4343 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 4242 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 4242 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 4040 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 3939 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 3939 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 3838 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 3838 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 3737 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 3636 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 3535 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 3535 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 3535 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 3434 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 3434 Available
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 3030 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 2929 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 2929 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 2626 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 2525 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 2525 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 2525 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 2525 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 2424 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 2424 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 2424 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 2323 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 2222 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 2121 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 2020 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 2020 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 1919 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 1818 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 1717 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 1616 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 1616 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 1616 Available
Gmelina philippensisPremnoideae · Gmelina Stable locus 1515 No matrix
Lamium albumLamioideae · Lamium Stable locus 1515 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1414 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 1414 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 1313 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 1111 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 1010 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 1010 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 1010 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 1010 Available
Perilla citriodoraNepetoideae · Perilla Stable locus 99 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 99 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 99 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 88 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 88 No matrix
Isodon serraNepetoideae · Isodon Stable locus 88 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 88 Available
Nepeta mussiniiNepetoideae · Nepeta Stable locus 88 Available
Salvia rosmarinusNepetoideae · Salvia Stable locus 88 Available
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 88 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 77 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 77 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 77 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 77 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 55 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 55 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 55 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 55 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
GWHPBJVA004288
Thymus quinquecostatusFlavonoid · PALblast Medium 33.7%—
GWHPBJVA008377
Thymus quinquecostatusFlavonoid · PALblast Medium 44.2%—
GWHPBJVA009095
Thymus quinquecostatusFlavonoid · PALblast Medium 35.2%—
GWHPBJVA009513
Thymus quinquecostatusFlavonoid · PALblast Medium 33.3%—
GWHPBJVA010351
Thymus quinquecostatusFlavonoid · PALblast Medium 33.2%—
GWHPBJVA011629
Thymus quinquecostatusFlavonoid · PALblast Medium 31.3%—
GWHPBJVA011955
Thymus quinquecostatusFlavonoid · PALblast Medium 30.8%—
GWHPBJVA012307
Thymus quinquecostatusFlavonoid · PALblast Medium 32.1%—
GWHPBJVA013398
Thymus quinquecostatusFlavonoid · PALblast Medium 32.9%—
GWHPBJVA013589
Thymus quinquecostatusFlavonoid · PALblast Medium 32.4%—
GWHPBJVA014261
Thymus quinquecostatusFlavonoid · PALblast Medium 31.4%—
GWHPBJVA016154
Thymus quinquecostatusFlavonoid · PALblast Medium 36.3%—
GWHPBJVA016301
Thymus quinquecostatusFlavonoid · PALblast Medium 36.4%—
GWHPBJVA016438
Thymus quinquecostatusFlavonoid · PALblast Medium 32.7%—
GWHPBJVA016499
Thymus quinquecostatusFlavonoid · PALblast Medium 35.4%—
GWHPBJVA016500
Thymus quinquecostatusFlavonoid · PALblast Medium 37.0%—
GWHPBJVA016523
Thymus quinquecostatusFlavonoid · PALblast Medium 32.7%—
GWHPBJVA016884
Thymus quinquecostatusFlavonoid · PALblast Medium 38.6%—
GWHPBJVA017272
Thymus quinquecostatusFlavonoid · PALblast Medium 46.6%—
GWHPBJVA017920
Thymus quinquecostatusFlavonoid · PALblast Medium 30.7%—
GWHPBJVA017943
Thymus quinquecostatusFlavonoid · PALblast Medium 30.4%—
GWHPBJVA019187
Thymus quinquecostatusFlavonoid · PALblast Medium 36.0%—
GWHPBJVA021170
Thymus quinquecostatusFlavonoid · PALblast Medium 38.1%—
GWHPBJVA021572
Thymus quinquecostatusFlavonoid · PALblast Medium 36.6%—
GWHPBJVA022896
Thymus quinquecostatusFlavonoid · PALblast Medium 33.7%—
GWHPBJVA023640
Thymus quinquecostatusFlavonoid · PALblast Medium 30.8%—
GWHPBJVA023968
Thymus quinquecostatusFlavonoid · PALblast Medium 33.6%—
GWHPBJVA024189
Thymus quinquecostatusFlavonoid · PALblast Medium 33.3%—
GWHPBJVA025782
Thymus quinquecostatusFlavonoid · PALblast Medium 35.0%—
GWHPBJVA025889
Thymus quinquecostatusFlavonoid · PALblast Medium 30.5%—
GWHPBJVA027555
Thymus quinquecostatusFlavonoid · PALblast Medium 31.0%—
GWHPBJVA027700
Thymus quinquecostatusFlavonoid · PALblast Medium 30.4%—
GlLon_005964-T1
Glechoma longitubaFlavonoid · PALblast Medium 81.1%—
GlLon_006262-T1
Glechoma longitubaFlavonoid · PALblast Medium 74.0%—
GlLon_015269-T1
Glechoma longitubaFlavonoid · PALblast Medium 30.6%—
GlLon_029506-T1
Glechoma longitubaFlavonoid · PALblast Medium 46.9%—
HOSA_c112193_g1_i1_len_419
Holmskioldia sanguineaFlavonoid · PALblast Medium 36.7%—
HOSA_c11253_g2_i1_len_478
Holmskioldia sanguineaFlavonoid · PALblast Medium 55.2%—
HOSA_c125002_g1_i1_len_356
Holmskioldia sanguineaFlavonoid · PALblast Medium 35.0%—
HOSA_c16707_g1_i1_len_655
Holmskioldia sanguineaFlavonoid · PALblast Medium 36.7%—
HOSA_c20933_g1_i1_len_1038
Holmskioldia sanguineaFlavonoid · PALblast Medium 42.2%—
HOSA_c34072_g1_i1_len_1575
Holmskioldia sanguineaFlavonoid · PALblast Medium 37.6%—
HOSA_c35782_g1_i1_len_251
Holmskioldia sanguineaFlavonoid · PALblast Medium 44.2%—
HOSA_c36591_g1_i1_len_302
Holmskioldia sanguineaFlavonoid · PALblast Medium 88.2%—
HOSA_c36853_g1_i1_len_1445
Holmskioldia sanguineaFlavonoid · PALblast Medium 36.0%—
HOSA_c37796_g1_i1_len_529
Holmskioldia sanguineaFlavonoid · PALblast Medium 80.2%—
HOSA_c38624_g1_i1_len_655
Holmskioldia sanguineaFlavonoid · PALblast Medium 89.9%—
HOSA_c39335_g1_i2_len_816
Holmskioldia sanguineaFlavonoid · PALblast Medium 35.7%—
HOSA_c39335_g2_i1_len_745
Holmskioldia sanguineaFlavonoid · PALblast Medium 45.8%—
HOSA_c42514_g2_i3_len_1004
Holmskioldia sanguineaFlavonoid · PALblast Medium 90.2%—