LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

PAL

Phenylalanine ammonia-lyase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeFlavonoid biosynthesis
Public candidate IDs
2,048
Species with candidates
80
Species with assignments
80
Source assignments
3,051
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers2,048 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
0.01 · higher in Lamiaceae
Prevalence delta
0
Comparable source
PlantSME family assignments
Comparable source count
3,051
Public candidate count
2,048
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 41850 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 22850 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 19650 Available
Rotheca myricoidesAjugoideae · Rotheca Stable locus 14950 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 9850 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 8950 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 8950 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 8550 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 7550 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 6450 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 5950 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 5350 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 4747 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 4444 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 4343 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 4343 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 4242 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 4242 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 4040 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 3939 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 3939 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 3838 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 3838 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 3737 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 3636 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 3535 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 3535 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 3535 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 3434 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 3434 Available
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 3030 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 2929 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 2929 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 2626 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 2525 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 2525 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 2525 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 2525 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 2424 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 2424 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 2424 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 2323 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 2222 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 2121 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 2020 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 2020 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 1919 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 1818 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 1717 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 1616 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 1616 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 1616 Available
Gmelina philippensisPremnoideae · Gmelina Stable locus 1515 No matrix
Lamium albumLamioideae · Lamium Stable locus 1515 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1414 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 1414 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 1313 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 1111 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 1010 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 1010 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 1010 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 1010 Available
Perilla citriodoraNepetoideae · Perilla Stable locus 99 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 99 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 99 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 88 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 88 No matrix
Isodon serraNepetoideae · Isodon Stable locus 88 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 88 Available
Nepeta mussiniiNepetoideae · Nepeta Stable locus 88 Available
Salvia rosmarinusNepetoideae · Salvia Stable locus 88 Available
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 88 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 77 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 77 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 77 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 77 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 55 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 55 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 55 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 55 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Teucrium_chamaedrys__Tcha3860
Teucrium chamaedrysFlavonoid · PALblast+hmm High 85.6%110.8
Teum.15G018650.1
Teucrium marumFlavonoid · PALblast+hmm High 85.1%110.8
Teum.15G018650.4
Teucrium marumFlavonoid · PALblast+hmm High 85.1%110.8
Teum.15G018650.5
Teucrium marumFlavonoid · PALblast+hmm High 85.1%110.8
evm.model.Chr12.164
Callicarpa nudifloraFlavonoid · PALblast+hmm High 84.4%110.8
KAL1549433.1
Salvia divinorumFlavonoid · PALblast+hmm High 85.9%110.7
XP_042049920.1
Salvia splendensFlavonoid · PALblast+hmm High 86.3%110.7
HOSA_c43675_g1_i1_len_750
Holmskioldia sanguineaFlavonoid · PALblast+hmm High 87.1%110.3
MAVU_c53269_g1_i1_len_2357
Marrubium vulgareFlavonoid · PALblast+hmm High 85.3%110.2
Teum.09G020390.1
Teucrium marumFlavonoid · PALblast+hmm High 75.1%110.1
Pat_B24G020300.m1
Pogostemon cablinFlavonoid · PALblast+hmm High 86.4%110.0
LECA_c41970_g1_i1_len_394
Leonurus cardiacaFlavonoid · PALblast+hmm High 93.1%109.9
MACO_g21015.t1
Marmoritis complanataFlavonoid · PALblast+hmm High 85.7%109.9
Teucrium_chamaedrys__Tcha28439
Teucrium chamaedrysFlavonoid · PALblast+hmm High 85.6%109.8
Teucrium_chamaedrys__Tcha73326
Teucrium chamaedrysFlavonoid · PALblast+hmm High 85.0%109.8
Teucrium_chamaedrys__Tcha88693
Teucrium chamaedrysFlavonoid · PALblast+hmm High 85.2%109.8
Teum.09G020390.2
Teucrium marumFlavonoid · PALblast+hmm High 85.6%109.8
evm.model.ptg000018l.180
Isodon serraFlavonoid · PALblast+hmm High 59.8%109.8
Teum.15G018690.1
Teucrium marumFlavonoid · PALblast+hmm High 84.4%109.6
Teum.15G018690.2
Teucrium marumFlavonoid · PALblast+hmm High 84.4%109.6
Pat_A18G173900.m1
Pogostemon cablinFlavonoid · PALblast+hmm High 82.5%109.5
evm.model.LG14.198
Clinopodium barosmumFlavonoid · PALblast+hmm High 81.1%109.1
BAPS_c49267_g1_i1_len_2342
Ballota pseudodictamnusFlavonoid · PALblast+hmm High 82.3%108.9
Pat_B17G151300.m1
Pogostemon cablinFlavonoid · PALblast+hmm High 79.5%108.4
CAame17G0026070.v1.94
Callicarpa americanaFlavonoid · PALblast+hmm High 84.0%108.3
CAame17G0026110.v1.94
Callicarpa americanaFlavonoid · PALblast+hmm High 85.0%108.3
evm.model.Chr17.190
Callicarpa nudifloraFlavonoid · PALblast+hmm High 85.1%108.3
evm.model.Chr17.192
Callicarpa nudifloraFlavonoid · PALblast+hmm High 84.1%108.3
LELE_c31926_g1_i1_len_2372
Leonotis leonurusFlavonoid · PALblast+hmm High 82.3%107.6
Teucrium_chamaedrys__Tcha42944
Teucrium chamaedrysFlavonoid · PALblast+hmm High 83.2%107.6
evm.model.LG19.1156
Clinopodium barosmumFlavonoid · PALblast+hmm High 52.2%105.4
Sbai1A614T103.1
Scutellaria baicalensisFlavonoid · PALblast+hmm High 69.7%105.3
scutellaria_barbata_GWHPAOTP003679
Scutellaria barbataFlavonoid · PALblast+hmm High 74.8%104.1
HYSU_c36717_g1_i1_len_485
Hyptis suaveolensFlavonoid · PALblast+hmm High 85.6%102.9
ocimum_sanctum_Ote100027520011
Ocimum tenuiflorumFlavonoid · PALblast+hmm High 72.7%102.9
Pat_B18G139900.m1
Pogostemon cablinFlavonoid · PALblast+hmm High 79.6%102.5
PRLA_c26021_g1_i1_len_624
Prostanthera lasianthosFlavonoid · PALblast+hmm High 89.4%102.3
Pat_A17G168500.m1
Pogostemon cablinFlavonoid · PALblast+hmm High 84.3%102.3
19:ILLG3G327.47m1
Isodon lophanthoidesFlavonoid · PALblast+hmm High 75.9%101.9
GWHPBJVA013516
Thymus quinquecostatusFlavonoid · PALblast+hmm High 76.6%101.9
evm.model.ptg000002l.194
Isodon serraFlavonoid · PALblast+hmm High 75.8%101.9
origanum_vulgare_427.g33.t1
Origanum vulgareFlavonoid · PALblast+hmm High 78.1%101.5
Ls3g04880.1
Leonurus sibiricusFlavonoid · PALblast+hmm High 80.0%95.7
SAOF_c59089_g1_i1_len_310
Salvia officinalisFlavonoid · PALblast+hmm High 98.1%92.2
SAOF_c26029_g1_i1_len_1116
Salvia officinalisFlavonoid · PALblast+hmm High 81.6%91.8
384144.g3.t1
Ocimum basilicumFlavonoid · PALblast+hmm High 73.3%90.3
1533.g25.t1_1533.g26.t1
Ocimum basilicumFlavonoid · PALblast+hmm High 71.6%89.8
MEOF_c53913_g1_i1_len_787
Melissa officinalisFlavonoid · PALblast+hmm High 85.4%89.5
LYAM_c32606_g1_i1_len_1102
Lycopus americanusFlavonoid · PALblast+hmm High 83.2%88.2
PEAT_c30857_g3_i1_len_1299
Perovskia atriplicifoliaFlavonoid · PALblast+hmm High 80.6%85.3