LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

UFGT

UFGT enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeFlavonoid biosynthesis
Public candidate IDs
2,489
Species with candidates
80
Species with assignments
80
Source assignments
2,830
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers2,489 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
2,830
Public candidate count
2,489
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 28950 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 10750 Available
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 8650 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 5450 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 5350 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 5150 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 5150 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 5050 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 4949 Available
Cornutia pyramidataPremnoideae · Cornutia Stable locus 4848 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 4848 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 4747 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 4747 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 4747 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 4747 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 4646 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 4646 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 4646 Available
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 4646 No matrix
Isodon serraNepetoideae · Isodon Stable locus 4545 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 4444 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 4444 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 4444 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 4242 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 4141 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 4141 Available
Glechoma hederaceaNepetoideae · Glechoma Stable locus 4040 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 4040 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 4040 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 4040 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 3838 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 3737 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 3737 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 3535 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 3535 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 3434 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 3333 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 3232 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 3131 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 3030 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 3030 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 3030 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 3030 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 3030 Available
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 3030 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 2929 No matrix
Lamium albumLamioideae · Lamium Stable locus 2929 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 2929 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 2828 Available
Salvia hispanicaNepetoideae · Salvia Stable locus 2727 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 2626 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 2626 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 2424 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 2424 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 2121 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 2020 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 2020 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 2020 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 1919 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 1919 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 1818 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 1818 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1818 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 1717 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 1717 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 1616 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 1515 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 1515 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 1515 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 1313 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 1212 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 1212 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1111 Available
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 1010 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 1010 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 1010 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 99 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 99 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 77 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 66 Available

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
PLBA_c42803_g1_i2_len_989
Plectranthus barbatusFlavonoid · UFGThmm Medium —93.4
STOF_c30640_g1_i1_len_325
Stachys officinalisFlavonoid · UFGThmm Medium —93.4
g51712.t1
Nepeta catariaFlavonoid · UFGThmm Medium —93.4
KAL8462907.1
Phlomoides rotataFlavonoid · UFGThmm Medium —93.2
THVU_c64399_g3_i1_len_748
Thymus vulgarisFlavonoid · UFGThmm Medium —93.2
CAame08G0024310.v1.94
Callicarpa americanaFlavonoid · UFGThmm Medium —93.1
GlLon_009690-T1
Glechoma longitubaFlavonoid · UFGThmm Medium —93.1
Clgra_023375-T1
Clinopodium gracileFlavonoid · UFGThmm Medium —93.0
GLHE_c65799_g5_i1_len_703
Glechoma hederaceaFlavonoid · UFGThmm Medium —92.9
HOSA_c44078_g1_i1_len_735
Holmskioldia sanguineaFlavonoid · UFGThmm Medium —92.8
LAAN_c34841_g1_i1_len_488
Lavandula angustifoliaFlavonoid · UFGThmm Medium —92.7
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_25.1072.mRNA1
Stenogyne calaminthoidesFlavonoid · UFGThmm Medium —92.5
XP_047961950.1
Salvia hispanicaFlavonoid · UFGThmm Medium —92.5
scutellaria_barbata_GWHPAOTP000684
Scutellaria barbataFlavonoid · UFGThmm Medium —92.5
LAAL_c50886_g1_i1_len_292
Lamium albumFlavonoid · UFGThmm Medium —92.3
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_8.898.mRNA1
Stenogyne calaminthoidesFlavonoid · UFGThmm Medium —92.2
THVU_c4785_g1_i1_len_492
Thymus vulgarisFlavonoid · UFGThmm Medium —92.2
GMPH_c38883_g1_i1_len_823
Gmelina philippensisFlavonoid · UFGThmm Medium —92.0
Clgra_002438-T1
Clinopodium gracileFlavonoid · UFGThmm Medium —91.9
MEPI_c32248_g1_i1_len_508
Mentha x piperitaFlavonoid · UFGThmm Medium —91.9
HOSA_c85630_g1_i1_len_460
Holmskioldia sanguineaFlavonoid · UFGThmm Medium —91.7
tectona_grandis_TgUn380g00060.t1
Tectona grandisFlavonoid · UFGThmm Medium —91.7
COTO_c71787_g1_i1_len_867
Congea tomentosaFlavonoid · UFGThmm Medium —91.6
HYSU_c78610_g1_i1_len_456
Hyptis suaveolensFlavonoid · UFGThmm Medium —91.6
BAPS_c43359_g1_i3_len_1216
Ballota pseudodictamnusFlavonoid · UFGThmm Medium —91.5
COPY_c10321_g1_i1_len_511
Cornutia pyramidataFlavonoid · UFGThmm Medium —91.3
PEAT_c28203_g1_i1_len_478
Perovskia atriplicifoliaFlavonoid · UFGThmm Medium —91.2
Pat_B23G109700.m1
Pogostemon cablinFlavonoid · UFGThmm Medium —91.2
PLBA_c82627_g1_i1_len_440
Plectranthus barbatusFlavonoid · UFGThmm Medium —91.1
Sbow03G0050550.1
Salvia bowleyanaFlavonoid · UFGThmm Medium —91.0
Teum.13G020230.2
Teucrium marumFlavonoid · UFGThmm Medium —90.9
MESP_c39745_g2_i4_len_2057
Mentha spicataFlavonoid · UFGThmm Medium —90.7
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_6.2076.mRNA1
Stenogyne calaminthoidesFlavonoid · UFGThmm Medium —90.7
evm.model.ptg000020l.371
Isodon serraFlavonoid · UFGThmm Medium —90.7
MESP_c16007_g1_i1_len_380
Mentha spicataFlavonoid · UFGThmm Medium —90.6
COPY_c70554_g1_i2_len_766
Cornutia pyramidataFlavonoid · UFGThmm Medium —90.4
GlLon_026060-T1
Glechoma longitubaFlavonoid · UFGThmm Medium —90.4
Pat_A31G063100.m1
Pogostemon cablinFlavonoid · UFGThmm Medium —90.2
STOF_c149857_g1_i1_len_309
Stachys officinalisFlavonoid · UFGThmm Medium —90.1
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_34.1029.mRNA1
Stenogyne calaminthoidesFlavonoid · UFGThmm Medium —90.1
LAAL_c30723_g1_i1_len_763
Lamium albumFlavonoid · UFGThmm Medium —90.0
PLBA_c60340_g1_i1_len_382
Plectranthus barbatusFlavonoid · UFGThmm Medium —90.0
COCA_c56316_g1_i1_len_787
Collinsonia canadensisFlavonoid · UFGThmm Medium —89.9
HOSA_c109261_g1_i1_len_451
Holmskioldia sanguineaFlavonoid · UFGThmm Medium —89.9
Pat_A17G145000.m1
Pogostemon cablinFlavonoid · UFGThmm Medium —89.9
PRMI_c46585_g2_i1_len_295
Premna microphyllaFlavonoid · UFGThmm Medium —89.8
Roff3787940429490
Salvia rosmarinusFlavonoid · UFGThmm Medium —89.7
SAOF_c8243_g1_i1_len_706
Salvia officinalisFlavonoid · UFGThmm Medium —89.4
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_1.135.mRNA1
Stenogyne calaminthoidesFlavonoid · UFGThmm Medium —89.3
ocimum_sanctum_Ote237382390001
Ocimum tenuiflorumFlavonoid · UFGThmm Medium —89.0