LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

4CL

4-coumarate--CoA ligase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmePhenylpropanoid biosynthesis
Public candidate IDs
3,998
Species with candidates
80
Species with assignments
80
Source assignments
7,290
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,998 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
7,290
Public candidate count
3,998
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 33950 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 29050 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 19750 Available
Teucrium marumAjugoideae · Teucrium Stable locus 18350 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 18150 Available
Salvia splendensNepetoideae · Salvia Stable locus 15650 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 14350 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 14150 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 13250 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 12050 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 11950 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 11850 Available
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 11150 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 10850 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 10750 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 9950 Available
Origanum vulgareNepetoideae · Origanum Stable locus 9750 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 9650 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 9650 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 9650 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 9550 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 9350 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 9350 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 9250 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 9250 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 9250 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 9150 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 9150 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 8750 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 8550 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 8350 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 8150 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 8150 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 8150 Available
Mentha spicataNepetoideae · Mentha Stable locus 8050 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 8050 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 8050 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 7950 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 7950 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 7850 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 7850 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 7750 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 7650 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 7650 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 7650 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 7650 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 7550 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 7450 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 7450 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 7450 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 7350 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 7350 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 7150 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 7150 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 7050 No matrix
Lamium albumLamioideae · Lamium Stable locus 6950 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 6850 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 6850 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 6750 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 6650 Available
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 6650 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 6550 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 6550 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 6550 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 6450 No matrix
Isodon serraNepetoideae · Isodon Stable locus 6450 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 6350 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 6350 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 6250 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 6150 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 6150 Available
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 6050 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 5850 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 5850 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 5850 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 5850 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 5750 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 5050 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 5050 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 4848 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
VIAG_c37379_g1_i1_len_2455
Vitex agnus-castusPhenylpropanoid · 4CLblast+hmm High 87.9%797.0
1887.g49.t1
Ocimum basilicumPhenylpropanoid · 4CLblast+hmm High 85.3%794.6
CAame10G0024230.v1.94
Callicarpa americanaPhenylpropanoid · 4CLblast+hmm High 87.2%794.2
WEFR_c102161_g1_i1_len_2550
Westringia fruticosaPhenylpropanoid · 4CLblast+hmm High 86.0%792.7
696.g26.t1
Ocimum basilicumPhenylpropanoid · 4CLblast+hmm High 84.7%792.4
evm.model.Chr05.631
Callicarpa nudifloraPhenylpropanoid · 4CLblast+hmm High 87.5%792.1
HYSU_c27823_g1_i1_len_2479
Hyptis suaveolensPhenylpropanoid · 4CLblast+hmm High 85.9%791.3
PRMI_c30385_g1_i1_len_3894
Premna microphyllaPhenylpropanoid · 4CLblast+hmm High 86.6%790.5
GMPH_c60770_g1_i1_len_2623
Gmelina philippensisPhenylpropanoid · 4CLblast+hmm High 87.3%790.4
scutellaria_barbata_GWHPAOTP031462
Scutellaria barbataPhenylpropanoid · 4CLblast+hmm High 86.6%789.6
origanum_vulgare_891.g26.t1
Origanum vulgarePhenylpropanoid · 4CLblast+hmm High 84.8%789.5
PLBA_c9755_g1_i1_len_2491
Plectranthus barbatusPhenylpropanoid · 4CLblast+hmm High 85.3%789.4
HOSA_c24769_g1_i1_len_2696
Holmskioldia sanguineaPhenylpropanoid · 4CLblast+hmm High 87.5%788.8
PEBA_c32227_g1_i1_len_2542
Petraeovitex bambusetoriumPhenylpropanoid · 4CLblast+hmm High 86.5%788.5
501.g40.t1
Ocimum basilicumPhenylpropanoid · 4CLblast+hmm High 84.5%787.0
9:ILLG8G244.31m1
Isodon lophanthoidesPhenylpropanoid · 4CLblast+hmm High 86.3%787.0
COTO_c31023_g1_i1_len_2684
Congea tomentosaPhenylpropanoid · 4CLblast+hmm High 86.6%786.9
g8550.t1
Salvia sclareaPhenylpropanoid · 4CLblast+hmm High 84.7%786.9
SAOF_c32154_g2_i1_len_2228
Salvia officinalisPhenylpropanoid · 4CLblast+hmm High 85.6%786.5
g10692.t1
Nepeta catariaPhenylpropanoid · 4CLblast+hmm High 85.0%786.0
g28260.t1
Ajuga decumbensPhenylpropanoid · 4CLblast+hmm High 87.7%785.7
ORMA_c90760_g1_i1_len_2298
Origanum majoranaPhenylpropanoid · 4CLblast+hmm High 84.5%785.4
g24512.t1
Nepeta mussiniiPhenylpropanoid · 4CLblast+hmm High 84.7%784.9
MEOF_c23996_g1_i1_len_2393
Melissa officinalisPhenylpropanoid · 4CLblast+hmm High 86.2%784.5
Pat_B03G164900.m1
Pogostemon cablinPhenylpropanoid · 4CLblast+hmm High 85.3%784.0
Pat_B03G164900.m2
Pogostemon cablinPhenylpropanoid · 4CLblast+hmm High 85.3%784.0
Pat_A04G182700.m1
Pogostemon cablinPhenylpropanoid · 4CLblast+hmm High 85.7%783.9
g6482.t1
Nepeta catariaPhenylpropanoid · 4CLblast+hmm High 84.7%783.8
Pat_A03G173900.m1
Pogostemon cablinPhenylpropanoid · 4CLblast+hmm High 85.4%783.1
THVU_c73530_g1_i1_len_2376
Thymus vulgarisPhenylpropanoid · 4CLblast+hmm High 85.7%782.9
PHFR_c70190_g1_i1_len_2553
Phlomis fruticosaPhenylpropanoid · 4CLblast+hmm High 86.3%782.8
MACO_g19127.t1
Marmoritis complanataPhenylpropanoid · 4CLblast+hmm High 84.5%782.7
evm.model.LG19.526
Clinopodium barosmumPhenylpropanoid · 4CLblast+hmm High 84.5%782.0
Sch000023698
Schizonepeta tenuifoliaPhenylpropanoid · 4CLblast+hmm High 85.7%781.8
MESP_c44486_g1_i1_len_2527
Mentha spicataPhenylpropanoid · 4CLblast+hmm High 84.5%781.6
Smil01G0025560.1.v1.484
Salvia miltiorrhizaPhenylpropanoid · 4CLblast+hmm High 85.6%781.6
Pat_B04G170000.m1
Pogostemon cablinPhenylpropanoid · 4CLblast+hmm High 85.3%781.3
Pat_B04G170000.m2
Pogostemon cablinPhenylpropanoid · 4CLblast+hmm High 85.3%781.3
Pat_B04G170000.m3
Pogostemon cablinPhenylpropanoid · 4CLblast+hmm High 85.3%781.3
PRLA_c69780_g1_i1_len_2546
Prostanthera lasianthosPhenylpropanoid · 4CLblast+hmm High 85.6%780.7
Dru_4G0006330.1
Dracocephalum rupestrePhenylpropanoid · 4CLblast+hmm High 85.6%780.3
AJRE_c41203_g1_i5_len_2527
Ajuga reptansPhenylpropanoid · 4CLblast+hmm High 88.1%780.0
COPY_c51497_g1_i1_len_2530
Cornutia pyramidataPhenylpropanoid · 4CLblast+hmm High 86.1%780.0
PEAT_c23351_g1_i1_len_2518
Perovskia atriplicifoliaPhenylpropanoid · 4CLblast+hmm High 85.4%779.9
Sbow01G0023320.1
Salvia bowleyanaPhenylpropanoid · 4CLblast+hmm High 85.1%779.8
GWHPBJVA014499
Thymus quinquecostatusPhenylpropanoid · 4CLblast+hmm High 85.3%779.6
g17159.t1
Hyssopus officinalisPhenylpropanoid · 4CLblast+hmm High 86.5%779.4
MEPI_c58225_g1_i3_len_2397
Mentha x piperitaPhenylpropanoid · 4CLblast+hmm High 84.0%779.3
CLBU_c51866_g1_i2_len_2306
Clerodendrum bungeiPhenylpropanoid · 4CLblast+hmm High 86.0%779.2
AG34_scaffold3_22870T
Agastache rugosaPhenylpropanoid · 4CLblast+hmm High 85.9%778.3