LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

4CL

4-coumarate--CoA ligase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmePhenylpropanoid biosynthesis
Public candidate IDs
3,998
Species with candidates
80
Species with assignments
80
Source assignments
7,290
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,998 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
7,290
Public candidate count
3,998
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 33950 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 29050 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 19750 Available
Teucrium marumAjugoideae · Teucrium Stable locus 18350 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 18150 Available
Salvia splendensNepetoideae · Salvia Stable locus 15650 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 14350 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 14150 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 13250 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 12050 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 11950 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 11850 Available
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 11150 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 10850 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 10750 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 9950 Available
Origanum vulgareNepetoideae · Origanum Stable locus 9750 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 9650 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 9650 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 9650 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 9550 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 9350 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 9350 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 9250 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 9250 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 9250 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 9150 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 9150 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 8750 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 8550 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 8350 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 8150 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 8150 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 8150 Available
Mentha spicataNepetoideae · Mentha Stable locus 8050 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 8050 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 8050 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 7950 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 7950 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 7850 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 7850 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 7750 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 7650 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 7650 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 7650 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 7650 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 7550 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 7450 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 7450 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 7450 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 7350 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 7350 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 7150 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 7150 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 7050 No matrix
Lamium albumLamioideae · Lamium Stable locus 6950 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 6850 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 6850 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 6750 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 6650 Available
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 6650 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 6550 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 6550 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 6550 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 6450 No matrix
Isodon serraNepetoideae · Isodon Stable locus 6450 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 6350 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 6350 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 6250 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 6150 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 6150 Available
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 6050 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 5850 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 5850 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 5850 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 5850 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 5750 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 5050 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 5050 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 4848 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Teum.07G015930.2
Teucrium marumPhenylpropanoid · 4CLblast+hmm High 77.3%270.1
30:ILLG11G328.64m1
Isodon lophanthoidesPhenylpropanoid · 4CLblast+hmm High 80.4%269.9
Es5A.G112600.t1
Elsholtzia splendensPhenylpropanoid · 4CLblast+hmm High 80.6%269.9
Es5B.G115800.t1
Elsholtzia splendensPhenylpropanoid · 4CLblast+hmm High 80.4%269.9
Mlonscaffold_9_length_337380420198580.1.v1.326
Mentha longifoliaPhenylpropanoid · 4CLblast+hmm High 60.5%269.9
KAL8536455.1
Phlomoides rotataPhenylpropanoid · 4CLblast+hmm High 63.2%269.8
MODI_c37648_g1_i1_len_1830
Monarda didymaPhenylpropanoid · 4CLblast+hmm High 59.5%269.8
g5968.t1
Salvia sclareaPhenylpropanoid · 4CLblast+hmm High 66.3%269.8
MAVU_c27340_g1_i2_len_2163
Marrubium vulgarePhenylpropanoid · 4CLblast+hmm High 77.1%269.7
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_26.79.mRNA1
Stenogyne calaminthoidesPhenylpropanoid · 4CLblast+hmm High 65.6%269.7
evm.model.LG10.1692
Clinopodium barosmumPhenylpropanoid · 4CLblast+hmm High 77.6%269.7
DRSE_g3224.t1
Drepanocaryum sewerzowiiPhenylpropanoid · 4CLblast+hmm High 77.9%269.6
GWHPBJVA001675
Thymus quinquecostatusPhenylpropanoid · 4CLblast+hmm High 53.6%269.6
MEPI_c59227_g1_i2_len_2042
Mentha x piperitaPhenylpropanoid · 4CLblast+hmm High 79.2%269.6
Teum.06G013550.1
Teucrium marumPhenylpropanoid · 4CLblast+hmm High 76.8%269.6
CLBU_c48886_g1_i1_len_2699
Clerodendrum bungeiPhenylpropanoid · 4CLblast+hmm High 72.4%269.5
Mlonscaffold_12_length_296600840034460.1.v1.326
Mentha longifoliaPhenylpropanoid · 4CLblast+hmm High 78.8%269.5
PLBA_c9542_g1_i1_len_1908
Plectranthus barbatusPhenylpropanoid · 4CLblast+hmm High 78.2%269.5
PRLA_c70186_g2_i2_len_2163
Prostanthera lasianthosPhenylpropanoid · 4CLblast+hmm High 78.8%269.5
g27107.t1
Ajuga decumbensPhenylpropanoid · 4CLblast+hmm High 66.5%269.5
g30923.t1
Hyssopus officinalisPhenylpropanoid · 4CLblast+hmm High 58.9%269.5
COPY_c79700_g2_i2_len_1972
Cornutia pyramidataPhenylpropanoid · 4CLblast+hmm High 80.5%269.4
KAL1565456.1
Salvia divinorumPhenylpropanoid · 4CLblast+hmm High 75.0%269.4
CAame11G0012240.v1.94
Callicarpa americanaPhenylpropanoid · 4CLblast+hmm High 79.2%269.3
Clgra_023058-T1
Clinopodium gracilePhenylpropanoid · 4CLblast+hmm High 63.2%269.3
MESP_c41505_g1_i1_len_2059
Mentha spicataPhenylpropanoid · 4CLblast+hmm High 79.0%269.3
PEAT_c43405_g1_i1_len_2060
Perovskia atriplicifoliaPhenylpropanoid · 4CLblast+hmm High 84.4%269.3
Mlonscaffold_1_length_466995370051080.1.v1.326
Mentha longifoliaPhenylpropanoid · 4CLblast+hmm High 56.5%269.2
STOF_c41982_g1_i1_len_2064
Stachys officinalisPhenylpropanoid · 4CLblast+hmm High 78.1%269.2
rna-gnl|WGS:QFCC|chr16_40987223_40990562.mrna1
Perilla frutescensPhenylpropanoid · 4CLblast+hmm High 65.7%269.2
30:ILLG11G318.63m1
Isodon lophanthoidesPhenylpropanoid · 4CLblast+hmm High 82.1%269.1
MAVU_c20937_g1_i1_len_2957
Marrubium vulgarePhenylpropanoid · 4CLblast+hmm High 68.8%269.1
PEBA_c40500_g1_i1_len_2194
Petraeovitex bambusetoriumPhenylpropanoid · 4CLblast+hmm High 85.2%269.1
rna-gnl|WGS:QFCC|chr01_17263218_17271414.mrna1
Perilla frutescensPhenylpropanoid · 4CLblast+hmm High 66.8%269.1
rna-gnl|WGS:QIYW|chr05_16123461_16131645.mrna1
Perilla citriodoraPhenylpropanoid · 4CLblast+hmm High 66.8%269.1
rna-gnl|WGS:QIYW|chr05_16123461_16131645.mrna1
Perilla frutescens var. hirtellaPhenylpropanoid · 4CLblast+hmm High 66.8%269.1
CAame11G0012250.v1.94
Callicarpa americanaPhenylpropanoid · 4CLblast+hmm High 78.0%269.0
CAame14G0015120.v1.94
Callicarpa americanaPhenylpropanoid · 4CLblast+hmm High 84.1%269.0
LECA_c30460_g2_i1_len_1901
Leonurus cardiacaPhenylpropanoid · 4CLblast+hmm High 75.5%269.0
MEOF_c53619_g1_i1_len_2010
Melissa officinalisPhenylpropanoid · 4CLblast+hmm High 82.1%269.0
Mc_c20g00060.1
Mosla chinensisPhenylpropanoid · 4CLblast+hmm High 30.2%269.0
evm.model.chr14.1973
Prunella vulgarisPhenylpropanoid · 4CLblast+hmm High 76.9%269.0
tectona_grandis_Tg06g17040.t1
Tectona grandisPhenylpropanoid · 4CLblast+hmm High 79.6%269.0
AJRE_c36564_g1_i1_len_1802
Ajuga reptansPhenylpropanoid · 4CLblast+hmm High 76.4%268.9
LAAN_c50711_g1_i2_len_2021
Lavandula angustifoliaPhenylpropanoid · 4CLblast+hmm High 83.3%268.9
evm.model.ptg000021l.684
Isodon serraPhenylpropanoid · 4CLblast+hmm High 80.2%268.9
origanum_vulgare_120010.g2.t1
Origanum vulgarePhenylpropanoid · 4CLblast+hmm High 61.8%268.8
Sbow02G0017380.1
Salvia bowleyanaPhenylpropanoid · 4CLblast+hmm High 65.7%268.7
Sbow02G0017440.1
Salvia bowleyanaPhenylpropanoid · 4CLblast+hmm High 65.7%268.7
AG34_scaffold3_30740T
Agastache rugosaPhenylpropanoid · 4CLblast+hmm High 80.9%268.6