LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

4CL

4-coumarate--CoA ligase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmePhenylpropanoid biosynthesis
Public candidate IDs
3,998
Species with candidates
80
Species with assignments
80
Source assignments
7,290
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,998 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
7,290
Public candidate count
3,998
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 33950 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 29050 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 19750 Available
Teucrium marumAjugoideae · Teucrium Stable locus 18350 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 18150 Available
Salvia splendensNepetoideae · Salvia Stable locus 15650 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 14350 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 14150 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 13250 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 12050 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 11950 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 11850 Available
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 11150 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 10850 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 10750 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 9950 Available
Origanum vulgareNepetoideae · Origanum Stable locus 9750 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 9650 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 9650 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 9650 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 9550 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 9350 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 9350 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 9250 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 9250 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 9250 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 9150 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 9150 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 8750 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 8550 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 8350 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 8150 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 8150 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 8150 Available
Mentha spicataNepetoideae · Mentha Stable locus 8050 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 8050 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 8050 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 7950 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 7950 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 7850 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 7850 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 7750 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 7650 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 7650 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 7650 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 7650 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 7550 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 7450 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 7450 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 7450 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 7350 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 7350 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 7150 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 7150 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 7050 No matrix
Lamium albumLamioideae · Lamium Stable locus 6950 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 6850 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 6850 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 6750 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 6650 Available
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 6650 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 6550 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 6550 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 6550 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 6450 No matrix
Isodon serraNepetoideae · Isodon Stable locus 6450 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 6350 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 6350 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 6250 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 6150 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 6150 Available
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 6050 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 5850 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 5850 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 5850 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 5850 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 5750 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 5050 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 5050 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 4848 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Sbai8C14T22.1
Scutellaria baicalensisPhenylpropanoid · 4CLblast+hmm High 74.7%709.6
ROMY_c81299_g1_i2_len_2625
Rotheca myricoidesPhenylpropanoid · 4CLblast+hmm High 83.0%709.4
GWHPBJVA007820
Thymus quinquecostatusPhenylpropanoid · 4CLblast+hmm High 80.5%709.0
CAame09G0001220.v1.94
Callicarpa americanaPhenylpropanoid · 4CLblast+hmm High 76.1%708.4
LELE_c19515_g1_i2_len_2622
Leonotis leonurusPhenylpropanoid · 4CLblast+hmm High 81.2%708.2
AJRE_c30156_g1_i1_len_2488
Ajuga reptansPhenylpropanoid · 4CLblast+hmm High 72.9%708.0
PLBA_c75945_g1_i1_len_2396
Plectranthus barbatusPhenylpropanoid · 4CLblast+hmm High 82.6%708.0
AG34_scaffold6_21810T
Agastache rugosaPhenylpropanoid · 4CLblast+hmm High 83.0%707.6
COTO_c41027_g1_i1_len_2777
Congea tomentosaPhenylpropanoid · 4CLblast+hmm High 83.4%707.6
PLBA_c40503_g1_i1_len_2540
Plectranthus barbatusPhenylpropanoid · 4CLblast+hmm High 74.1%707.1
LECA_c23222_g1_i1_len_2733
Leonurus cardiacaPhenylpropanoid · 4CLblast+hmm High 81.6%706.9
XP_042030202.1
Salvia splendensPhenylpropanoid · 4CLblast+hmm High 73.6%706.8
evm.model.chr1.1166
Prunella vulgarisPhenylpropanoid · 4CLblast+hmm High 81.9%706.8
AGFO_c17711_g1_i1_len_2588
Agastache foeniculumPhenylpropanoid · 4CLblast+hmm High 83.0%706.7
MEOF_c53723_g1_i1_len_2589
Melissa officinalisPhenylpropanoid · 4CLblast+hmm High 81.3%706.7
SAOF_c29681_g1_i1_len_2724
Salvia officinalisPhenylpropanoid · 4CLblast+hmm High 82.6%706.7
DRSE_g23233.t2
Drepanocaryum sewerzowiiPhenylpropanoid · 4CLblast+hmm High 80.8%706.5
Smil02G0032370.1.v1.484
Salvia miltiorrhizaPhenylpropanoid · 4CLblast+hmm High 81.0%706.5
g14755.t1_g14756.t1
Nepeta catariaPhenylpropanoid · 4CLblast+hmm High 80.8%706.4
693.g42.t1
Ocimum basilicumPhenylpropanoid · 4CLblast+hmm High 81.5%706.3
GlLon_023878-T1
Glechoma longitubaPhenylpropanoid · 4CLblast+hmm High 81.8%706.0
Dru_1G0045040.2
Dracocephalum rupestrePhenylpropanoid · 4CLblast+hmm High 82.5%705.9
XP_042046172.1
Salvia splendensPhenylpropanoid · 4CLblast+hmm High 82.3%705.7
g3369.t1
Salvia sclareaPhenylpropanoid · 4CLblast+hmm High 82.4%705.6
DRSE_g23233.t1
Drepanocaryum sewerzowiiPhenylpropanoid · 4CLblast+hmm High 80.8%705.5
THVU_c74703_g1_i1_len_2663
Thymus vulgarisPhenylpropanoid · 4CLblast+hmm High 81.9%705.4
Es2B.G267100.t1
Elsholtzia splendensPhenylpropanoid · 4CLblast+hmm High 82.8%705.1
GMPH_c25305_g1_i2_len_3194
Gmelina philippensisPhenylpropanoid · 4CLblast+hmm High 83.6%705.1
Pat_A01G180100.m1
Pogostemon cablinPhenylpropanoid · 4CLblast+hmm High 81.6%704.9
GLHE_c65877_g1_i1_len_2852
Glechoma hederaceaPhenylpropanoid · 4CLblast+hmm High 82.0%704.8
evm.model.ptg000018l.681
Isodon serraPhenylpropanoid · 4CLblast+hmm High 82.1%704.8
tectona_grandis_Tg14g15560.t1
Tectona grandisPhenylpropanoid · 4CLblast+hmm High 75.0%704.5
g18637.t1
Nepeta mussiniiPhenylpropanoid · 4CLblast+hmm High 80.8%704.2
Teucrium_chamaedrys__Tcha77872
Teucrium chamaedrysPhenylpropanoid · 4CLblast+hmm High 72.4%704.1
Pat_A02G208900.m1
Pogostemon cablinPhenylpropanoid · 4CLblast+hmm High 82.0%704.0
CLBU_c52612_g1_i3_len_3880
Clerodendrum bungeiPhenylpropanoid · 4CLblast+hmm High 71.7%703.9
Es2A.G266700.t1
Elsholtzia splendensPhenylpropanoid · 4CLblast+hmm High 82.8%703.9
g21296.t1
Nepeta catariaPhenylpropanoid · 4CLblast+hmm High 80.1%703.9
Lj7g03740.1
Leonurus japonicusPhenylpropanoid · 4CLblast+hmm High 81.8%703.8
MESP_c43325_g1_i1_len_2590
Mentha spicataPhenylpropanoid · 4CLblast+hmm High 82.9%703.8
Ls5g32380.1
Leonurus sibiricusPhenylpropanoid · 4CLblast+hmm High 81.6%703.1
XP_041999756.1
Salvia splendensPhenylpropanoid · 4CLblast+hmm High 82.8%703.1
MACO_g14820.t1
Marmoritis complanataPhenylpropanoid · 4CLblast+hmm High 81.3%702.9
MODI_c42486_g1_i1_len_2595
Monarda didymaPhenylpropanoid · 4CLblast+hmm High 80.8%702.9
PRMI_c12782_g1_i1_len_2289
Premna microphyllaPhenylpropanoid · 4CLblast+hmm High 83.9%702.6
Pat_B02G176900.m1
Pogostemon cablinPhenylpropanoid · 4CLblast+hmm High 81.8%702.4
XP_047962846.1
Salvia hispanicaPhenylpropanoid · 4CLblast+hmm High 82.3%702.4
ORMA_c434_g1_i1_len_2906
Origanum majoranaPhenylpropanoid · 4CLblast+hmm High 82.9%702.2
evm.model.Chr02.545
Callicarpa nudifloraPhenylpropanoid · 4CLblast+hmm High 83.7%702.2
PHFR_c71847_g2_i7_len_2825
Phlomis fruticosaPhenylpropanoid · 4CLblast+hmm High 81.2%702.1