LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

CCR

Cinnamoyl-CoA reductase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmePhenylpropanoid biosynthesis
Public candidate IDs
4,000
Species with candidates
80
Species with assignments
80
Source assignments
10,055
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers4,000 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
0.039 · higher in Lamiaceae
Prevalence delta
0
Comparable source
PlantSME family assignments
Comparable source count
10,055
Public candidate count
4,000
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 47550 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 36050 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 28250 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 26150 Available
Teucrium marumAjugoideae · Teucrium Stable locus 25950 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 25850 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 22850 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 22350 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 18550 Available
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 17950 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 17850 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 17350 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 16650 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 16550 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 15450 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 14350 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 14050 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 13850 Available
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 13450 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 12750 Available
Origanum vulgareNepetoideae · Origanum Stable locus 12450 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 12350 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 11650 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 11550 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 11550 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 11450 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 11350 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 11050 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 11050 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 10950 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 10850 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 10750 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 10750 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 10750 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 10750 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 10650 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 10550 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 10450 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 10450 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 10350 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 10350 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 10250 Available
Ballota pseudodictamnusLamioideae · Ballota Stable locus 10150 No matrix
Isodon serraNepetoideae · Isodon Stable locus 10150 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 10150 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 9950 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 9950 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 9850 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 9850 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 9650 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 9650 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 9650 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 9650 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 9550 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 9350 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 9350 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 9350 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 9350 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 9350 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 9250 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 9150 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 9050 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 9050 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 8850 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 8850 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 8750 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 8750 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 8750 No matrix
Lamium albumLamioideae · Lamium Stable locus 8650 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 8550 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 8550 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 8450 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 8150 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 8150 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 8050 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 7950 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 7950 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 7950 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 7850 Available
Marrubium vulgareLamioideae · Marrubium Stable locus 7750 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
GLHE_c65399_g2_i4_len_1608
Glechoma hederaceaPhenylpropanoid · CCRblast+hmm High 57.2%263.9
rna-gnl|WGS:QFCC|chr20_36563285_36582206.mrna1
Perilla frutescensPhenylpropanoid · CCRblast+hmm High 55.3%263.5
rna-gnl|WGS:QIYW|chr05_27250496_27267443.mrna1
Perilla citriodoraPhenylpropanoid · CCRblast+hmm High 55.3%263.5
rna-gnl|WGS:QIYW|chr05_27250496_27267443.mrna1
Perilla frutescens var. hirtellaPhenylpropanoid · CCRblast+hmm High 55.3%263.5
rna-gnl|WGS:QFCC|chr06_09837635_09839097.mrna1
Perilla frutescensPhenylpropanoid · CCRblast+hmm High 52.6%263.3
evm.model.LG16.1564
Clinopodium barosmumPhenylpropanoid · CCRblast+hmm High 52.5%262.6
GlLon_006707-T1
Glechoma longitubaPhenylpropanoid · CCRblast+hmm High 54.7%262.2
KAL8499724.1
Phlomoides rotataPhenylpropanoid · CCRblast+hmm High 53.0%261.9
KAL8499725.1
Phlomoides rotataPhenylpropanoid · CCRblast+hmm High 53.0%261.9
Clgra_025008-T1
Clinopodium gracilePhenylpropanoid · CCRblast+hmm High 52.2%261.7
KAL8499720.1
Phlomoides rotataPhenylpropanoid · CCRblast+hmm High 53.8%261.5
KAL8499722.1
Phlomoides rotataPhenylpropanoid · CCRblast+hmm High 53.8%261.5
COPY_c76834_g2_i2_len_1772
Cornutia pyramidataPhenylpropanoid · CCRblast+hmm High 66.9%261.2
385244.g9.t1
Ocimum basilicumPhenylpropanoid · CCRblast+hmm High 53.8%261.0
ocimum_sanctum_Ote100133170071
Ocimum tenuiflorumPhenylpropanoid · CCRblast+hmm High 45.9%260.5
30:ILLG11G370.93m1
Isodon lophanthoidesPhenylpropanoid · CCRblast+hmm High 63.6%260.3
evm.model.ptg000020l.190
Isodon serraPhenylpropanoid · CCRblast+hmm High 63.6%260.3
Es3B.G170400.t1
Elsholtzia splendensPhenylpropanoid · CCRblast+hmm High 51.8%260.1
Teucrium_chamaedrys__Tcha92078
Teucrium chamaedrysPhenylpropanoid · CCRblast+hmm High 68.4%259.9
Ls7g03790.1
Leonurus sibiricusPhenylpropanoid · CCRblast+hmm High 48.8%258.9
tectona_grandis_Tg06g16900.t1
Tectona grandisPhenylpropanoid · CCRblast+hmm High 66.9%258.8
HOSA_c29009_g1_i3_len_1478
Holmskioldia sanguineaPhenylpropanoid · CCRblast+hmm High 65.9%257.3
tectona_grandis_Tg16g04340.t1
Tectona grandisPhenylpropanoid · CCRblast+hmm High 46.1%257.0
COTO_c45186_g3_i1_len_1489
Congea tomentosaPhenylpropanoid · CCRblast+hmm High 65.2%256.5
385346.g91.t1
Ocimum basilicumPhenylpropanoid · CCRblast+hmm High 63.7%256.3
g315.t1
Ajuga decumbensPhenylpropanoid · CCRblast+hmm High 67.3%256.2
GMPH_c37107_g1_i1_len_1397
Gmelina philippensisPhenylpropanoid · CCRblast+hmm High 66.6%256.0
Ls3g18450.1
Leonurus sibiricusPhenylpropanoid · CCRblast+hmm High 65.7%255.1
AJRE_c33682_g1_i2_len_1402
Ajuga reptansPhenylpropanoid · CCRblast+hmm High 67.0%254.9
CAame17G0004850.v1.94
Callicarpa americanaPhenylpropanoid · CCRblast+hmm High 66.6%254.9
Lj2g02180.1
Leonurus japonicusPhenylpropanoid · CCRblast+hmm High 66.4%254.9
CLBU_c46303_g1_i2_len_1455
Clerodendrum bungeiPhenylpropanoid · CCRblast+hmm High 66.1%254.8
MEPI_c50121_g4_i1_len_1204
Mentha x piperitaPhenylpropanoid · CCRblast+hmm High 52.0%254.7
Pat_A07G039900.m1
Pogostemon cablinPhenylpropanoid · CCRblast+hmm High 47.1%254.6
HYSU_c30615_g1_i2_len_1202
Hyptis suaveolensPhenylpropanoid · CCRblast+hmm High 63.8%254.5
BAPS_c43908_g1_i1_len_1323
Ballota pseudodictamnusPhenylpropanoid · CCRblast+hmm High 65.0%254.4
382847.g33.t1
Ocimum basilicumPhenylpropanoid · CCRblast+hmm High 63.4%254.1
evm.model.Chr17.1272
Callicarpa nudifloraPhenylpropanoid · CCRblast+hmm High 66.9%253.8
g41196.t1
Nepeta catariaPhenylpropanoid · CCRblast+hmm High 63.2%253.8
Ms_c009g01771.1
Mosla soochowensisPhenylpropanoid · CCRblast+hmm High 63.8%253.5
PLBA_c22677_g1_i1_len_1331
Plectranthus barbatusPhenylpropanoid · CCRblast+hmm High 62.3%253.5
539.g138.t1
Ocimum basilicumPhenylpropanoid · CCRblast+hmm High 65.0%253.3
MACO_g8943.t1
Marmoritis complanataPhenylpropanoid · CCRblast+hmm High 63.8%253.3
rna-gnl|WGS:QIYW|chr08_19061837_19064542.mrna1
Perilla citriodoraPhenylpropanoid · CCRblast+hmm High 63.3%253.3
rna-gnl|WGS:QIYW|chr08_19061837_19064542.mrna1
Perilla frutescens var. hirtellaPhenylpropanoid · CCRblast+hmm High 63.3%253.3
DRSE_g9435.t1
Drepanocaryum sewerzowiiPhenylpropanoid · CCRblast+hmm High 64.2%252.8
Mc4g18190.1
Mosla chinensisPhenylpropanoid · CCRblast+hmm High 63.0%252.5
PEBA_c26815_g1_i1_len_1401
Petraeovitex bambusetoriumPhenylpropanoid · CCRblast+hmm High 67.7%252.4
rna-gnl|WGS:QFCC|chr11_39434977_39437581.mrna1
Perilla frutescensPhenylpropanoid · CCRblast+hmm High 63.4%252.1
g5178.t1
Nepeta mussiniiPhenylpropanoid · CCRblast+hmm High 63.2%251.7