LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

CCR

Cinnamoyl-CoA reductase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmePhenylpropanoid biosynthesis
Public candidate IDs
4,000
Species with candidates
80
Species with assignments
80
Source assignments
10,055
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers4,000 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
0.039 · higher in Lamiaceae
Prevalence delta
0
Comparable source
PlantSME family assignments
Comparable source count
10,055
Public candidate count
4,000
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 47550 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 36050 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 28250 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 26150 Available
Teucrium marumAjugoideae · Teucrium Stable locus 25950 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 25850 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 22850 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 22350 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 18550 Available
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 17950 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 17850 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 17350 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 16650 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 16550 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 15450 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 14350 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 14050 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 13850 Available
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 13450 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 12750 Available
Origanum vulgareNepetoideae · Origanum Stable locus 12450 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 12350 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 11650 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 11550 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 11550 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 11450 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 11350 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 11050 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 11050 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 10950 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 10850 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 10750 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 10750 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 10750 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 10750 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 10650 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 10550 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 10450 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 10450 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 10350 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 10350 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 10250 Available
Ballota pseudodictamnusLamioideae · Ballota Stable locus 10150 No matrix
Isodon serraNepetoideae · Isodon Stable locus 10150 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 10150 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 9950 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 9950 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 9850 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 9850 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 9650 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 9650 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 9650 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 9650 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 9550 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 9350 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 9350 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 9350 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 9350 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 9350 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 9250 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 9150 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 9050 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 9050 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 8850 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 8850 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 8750 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 8750 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 8750 No matrix
Lamium albumLamioideae · Lamium Stable locus 8650 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 8550 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 8550 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 8450 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 8150 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 8150 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 8050 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 7950 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 7950 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 7950 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 7850 Available
Marrubium vulgareLamioideae · Marrubium Stable locus 7750 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
g42409.t1.1.5b2d4a33
Nepeta catariaPhenylpropanoid · CCRblast+hmm High 74.2%187.1
g42409.t1.2.5b2d4a33
Nepeta catariaPhenylpropanoid · CCRblast+hmm High 74.2%187.1
383637.g25.t1
Ocimum basilicumPhenylpropanoid · CCRblast+hmm High 62.9%187.0
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_26.1018.mRNA1
Stenogyne calaminthoidesPhenylpropanoid · CCRblast+hmm High 64.3%186.8
CAame10G0017090.v1.94
Callicarpa americanaPhenylpropanoid · CCRblast+hmm High 74.4%186.6
Pat_A03G146100.m1
Pogostemon cablinPhenylpropanoid · CCRblast+hmm High 64.2%186.6
Pat_B04G253500.m1
Pogostemon cablinPhenylpropanoid · CCRblast+hmm High 72.0%186.4
Teucrium_chamaedrys__Tcha40714
Teucrium chamaedrysPhenylpropanoid · CCRblast+hmm High 64.7%186.2
Pat_B03G139400.m1
Pogostemon cablinPhenylpropanoid · CCRblast+hmm High 64.0%186.1
MACO_g5922.t1
Marmoritis complanataPhenylpropanoid · CCRblast+hmm High 74.8%186.0
g27957.t1
Ajuga decumbensPhenylpropanoid · CCRblast+hmm High 65.2%186.0
HOSA_c48789_g1_i2_len_1940
Holmskioldia sanguineaPhenylpropanoid · CCRblast+hmm High 66.8%185.8
scutellaria_barbata_GWHPAOTP031742
Scutellaria barbataPhenylpropanoid · CCRblast+hmm High 65.0%185.8
evm.model.Chr05.960
Callicarpa nudifloraPhenylpropanoid · CCRblast+hmm High 66.5%185.7
Teucrium_chamaedrys__Tcha177831
Teucrium chamaedrysPhenylpropanoid · CCRblast+hmm High 69.6%185.6
Teucrium_chamaedrys__Tcha35494
Teucrium chamaedrysPhenylpropanoid · CCRblast+hmm High 69.6%185.4
Teucrium_chamaedrys__Tcha35495
Teucrium chamaedrysPhenylpropanoid · CCRblast+hmm High 62.7%185.1
Teum.06G022090.1
Teucrium marumPhenylpropanoid · CCRblast+hmm High 69.6%185.1
COPY_c76473_g2_i3_len_2626
Cornutia pyramidataPhenylpropanoid · CCRblast+hmm High 65.8%185.0
XP_047939359.1
Salvia hispanicaPhenylpropanoid · CCRblast+hmm High 71.8%184.7
PHFR_c136545_g1_i1_len_744
Phlomis fruticosaPhenylpropanoid · CCRblast+hmm High 77.0%184.6
Teucrium_chamaedrys__Tcha44847
Teucrium chamaedrysPhenylpropanoid · CCRblast+hmm High 71.6%184.5
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_26.320.mRNA1
Stenogyne calaminthoidesPhenylpropanoid · CCRblast+hmm High 65.1%184.3
Teucrium_chamaedrys__Tcha55786
Teucrium chamaedrysPhenylpropanoid · CCRblast+hmm High 69.6%184.2
ROMY_c80377_g1_i3_len_2220
Rotheca myricoidesPhenylpropanoid · CCRblast+hmm High 64.3%184.1
PEBA_c38994_g1_i1_len_2412
Petraeovitex bambusetoriumPhenylpropanoid · CCRblast+hmm High 64.4%184.0
Pat_A04G281200.m1
Pogostemon cablinPhenylpropanoid · CCRblast+hmm High 72.5%184.0
GMPH_c34535_g1_i5_len_3905
Gmelina philippensisPhenylpropanoid · CCRblast+hmm High 66.0%183.8
XP_042067882.1
Salvia splendensPhenylpropanoid · CCRblast+hmm High 74.5%183.8
Pat_A03G268300.m1
Pogostemon cablinPhenylpropanoid · CCRblast+hmm High 73.9%183.4
g24154.t1
Nepeta catariaPhenylpropanoid · CCRblast+hmm High 75.4%182.8
LAAL_c29507_g1_i1_len_2292
Lamium albumPhenylpropanoid · CCRblast+hmm High 64.9%182.7
Clgra_023932-T1
Clinopodium gracilePhenylpropanoid · CCRblast+hmm High 59.7%182.6
KAL1532425.1
Salvia divinorumPhenylpropanoid · CCRblast+hmm High 61.6%182.4
rna-gnl|WGS:QFCC|chr08_24442284_24449130.mrna1
Perilla frutescensPhenylpropanoid · CCRblast+hmm High 64.0%182.4
rna-gnl|WGS:QIYW|chr04_37896636_37903484.mrna1
Perilla citriodoraPhenylpropanoid · CCRblast+hmm High 64.0%182.4
rna-gnl|WGS:QIYW|chr04_37896636_37903484.mrna1
Perilla frutescens var. hirtellaPhenylpropanoid · CCRblast+hmm High 64.0%182.4
TECA_c30280_g3_i1_len_1387
Teucrium canadensePhenylpropanoid · CCRblast+hmm High 69.1%182.2
HYSU_c30062_g1_i1_len_1943
Hyptis suaveolensPhenylpropanoid · CCRblast+hmm High 62.3%182.0
LECA_c29172_g1_i2_len_2310
Leonurus cardiacaPhenylpropanoid · CCRblast+hmm High 65.6%182.0
GlLon_007459-T1
Glechoma longitubaPhenylpropanoid · CCRblast+hmm High 64.4%181.7
LELE_c26395_g1_i1_len_2217
Leonotis leonurusPhenylpropanoid · CCRblast+hmm High 63.5%181.7
Ms_c001g01262.1
Mosla soochowensisPhenylpropanoid · CCRblast+hmm High 63.7%181.7
g17867.t1.7.5b43bdc2
Hyssopus officinalisPhenylpropanoid · CCRblast+hmm High 62.1%181.7
BAPS_c35877_g1_i1_len_2452
Ballota pseudodictamnusPhenylpropanoid · CCRblast+hmm High 64.9%181.5
g17867.t1
Hyssopus officinalisPhenylpropanoid · CCRblast+hmm High 62.6%181.5
g17867.t1.1.5b43bdbe
Hyssopus officinalisPhenylpropanoid · CCRblast+hmm High 62.6%181.5
g17867.t1.3.5b43bdbe
Hyssopus officinalisPhenylpropanoid · CCRblast+hmm High 62.6%181.5
g17867.t1.4.5b43bdbe
Hyssopus officinalisPhenylpropanoid · CCRblast+hmm High 62.6%181.5
HYSU_c33513_g1_i2_len_2175
Hyptis suaveolensPhenylpropanoid · CCRblast+hmm High 60.8%180.9