LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

CSE

Caffeoyl shikimate esterase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmePhenylpropanoid biosynthesis
Public candidate IDs
3,766
Species with candidates
80
Species with assignments
80
Source assignments
5,346
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,766 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
5,346
Public candidate count
3,766
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 24650 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 22150 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 18050 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 16850 Available
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 13850 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 12150 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 10950 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 10850 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 10450 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 9750 Available
Salvia rosmarinusNepetoideae · Salvia Stable locus 9350 Available
Perilla frutescensNepetoideae · Perilla Stable locus 8950 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 8550 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 8550 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 8450 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 7950 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 7950 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 7750 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 7450 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 7350 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 7050 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 6950 No matrix
Isodon serraNepetoideae · Isodon Stable locus 6850 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 6750 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 6750 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 6650 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 6550 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 6550 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 6550 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 6350 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 6350 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 6150 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 6050 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 6050 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 5850 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 5850 No matrix
Lamium albumLamioideae · Lamium Stable locus 5750 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 5750 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 5750 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 5650 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 5550 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 5450 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 5450 Available
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 5350 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 5250 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 5050 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 5050 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 4949 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 4949 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 4949 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 4949 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 4747 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 4747 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 4747 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 4747 Available
Ajuga reptansAjugoideae · Ajuga Stable locus 4646 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 4646 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 4545 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 4545 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 4545 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 4545 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 4444 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 4444 Available
Mentha x piperitaNepetoideae · Mentha Stable locus 4444 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 4444 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 4343 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 4242 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 4242 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 4141 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 4141 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 4040 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 3939 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 3939 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 3939 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 3838 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 3838 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 3737 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 3636 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 3636 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 3333 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Teum.04G013140.2
Teucrium marumPhenylpropanoid · CSEblast+hmm High 60.0%268.6
Teum.04G013140.3
Teucrium marumPhenylpropanoid · CSEblast+hmm High 60.0%268.6
Teum.04G013140.4
Teucrium marumPhenylpropanoid · CSEblast+hmm High 60.0%268.6
Teum.04G013140.5
Teucrium marumPhenylpropanoid · CSEblast+hmm High 60.0%268.6
Es1B.G146800.t1
Elsholtzia splendensPhenylpropanoid · CSEblast+hmm High 58.7%268.5
384250.g173.t1
Ocimum basilicumPhenylpropanoid · CSEblast+hmm High 57.7%268.4
rna-gnl|WGS:QFCC|chr09_63597633_63619705.mrna1
Perilla frutescensPhenylpropanoid · CSEblast+hmm High 58.4%268.4
Mc2g32520.1
Mosla chinensisPhenylpropanoid · CSEblast+hmm High 58.8%268.3
tectona_grandis_Tg03g18030.t1
Tectona grandisPhenylpropanoid · CSEblast+hmm High 53.9%268.3
384250.g168.t1
Ocimum basilicumPhenylpropanoid · CSEblast+hmm High 55.2%268.2
Sch000017584
Schizonepeta tenuifoliaPhenylpropanoid · CSEblast+hmm High 60.0%268.2
evm.model.Chr01.1120
Callicarpa nudifloraPhenylpropanoid · CSEblast+hmm High 56.5%268.2
Mc2g32560.1
Mosla chinensisPhenylpropanoid · CSEblast+hmm High 59.0%268.1
Pat_A19G064400.m1
Pogostemon cablinPhenylpropanoid · CSEblast+hmm High 57.4%268.1
Teucrium_chamaedrys__Tcha120657
Teucrium chamaedrysPhenylpropanoid · CSEblast+hmm High 57.8%268.1
evm.model.Chr16.213
Callicarpa nudifloraPhenylpropanoid · CSEblast+hmm High 60.3%268.1
3:ILLG6G281.120m1
Isodon lophanthoidesPhenylpropanoid · CSEblast+hmm High 57.1%268.0
543.g76.t1
Ocimum basilicumPhenylpropanoid · CSEblast+hmm High 58.3%268.0
543.g79.t1
Ocimum basilicumPhenylpropanoid · CSEblast+hmm High 55.9%268.0
9:ILLG8G130.39m1
Isodon lophanthoidesPhenylpropanoid · CSEblast+hmm High 59.4%268.0
9:ILLG8G130.43m1
Isodon lophanthoidesPhenylpropanoid · CSEblast+hmm High 59.4%268.0
9:ILLG8G130.44m1
Isodon lophanthoidesPhenylpropanoid · CSEblast+hmm High 59.4%268.0
Pat_B20G066900.m1
Pogostemon cablinPhenylpropanoid · CSEblast+hmm High 56.7%268.0
evm.model.ptg000003l.1077
Isodon serraPhenylpropanoid · CSEblast+hmm High 59.4%268.0
evm.model.ptg000003l.1079
Isodon serraPhenylpropanoid · CSEblast+hmm High 59.4%268.0
evm.model.ptg000003l.1082
Isodon serraPhenylpropanoid · CSEblast+hmm High 59.4%268.0
g17957.t1
Nepeta mussiniiPhenylpropanoid · CSEblast+hmm High 61.3%268.0
GWHPBJVA011647
Thymus quinquecostatusPhenylpropanoid · CSEblast+hmm High 58.7%267.9
Sbai9A188T67.1
Scutellaria baicalensisPhenylpropanoid · CSEblast+hmm High 61.2%267.9
ocimum_sanctum_Ote100001830011
Ocimum tenuiflorumPhenylpropanoid · CSEblast+hmm High 64.8%267.9
tectona_grandis_Tg02g16140.t1
Tectona grandisPhenylpropanoid · CSEblast+hmm High 56.7%267.9
7:ILLG7G160.8m1
Isodon lophanthoidesPhenylpropanoid · CSEblast+hmm High 62.4%267.7
Clgra_016066-T1
Clinopodium gracilePhenylpropanoid · CSEblast+hmm High 61.5%267.7
evm.model.ptg000023l.1076
Isodon serraPhenylpropanoid · CSEblast+hmm High 62.4%267.7
Pat_A20G070100.m1
Pogostemon cablinPhenylpropanoid · CSEblast+hmm High 57.8%267.6
g20861.t1
Nepeta mussiniiPhenylpropanoid · CSEblast+hmm High 59.2%267.5
KAL8549939.1
Phlomoides rotataPhenylpropanoid · CSEblast+hmm High 58.6%267.4
Ms_c005g01751.1
Mosla soochowensisPhenylpropanoid · CSEblast+hmm High 59.7%267.4
tectona_grandis_Tg03g18090.t1
Tectona grandisPhenylpropanoid · CSEblast+hmm High 54.7%267.4
GMPH_c32634_g1_i2_len_1990
Gmelina philippensisPhenylpropanoid · CSEblast+hmm High 53.6%267.2
VIAG_c39810_g2_i1_len_1824
Vitex agnus-castusPhenylpropanoid · CSEblast+hmm High 50.5%267.2
evm.model.ptg000011l.884
Isodon serraPhenylpropanoid · CSEblast+hmm High 57.7%267.2
KAL8549952.1
Phlomoides rotataPhenylpropanoid · CSEblast+hmm High 59.2%267.1
Mc2g32650.1
Mosla chinensisPhenylpropanoid · CSEblast+hmm High 58.9%267.1
Mlonscaffold_3_length_454607550092290.1.v1.326
Mentha longifoliaPhenylpropanoid · CSEblast+hmm High 57.5%267.1
ORMA_c45533_g1_i1_len_1883
Origanum majoranaPhenylpropanoid · CSEblast+hmm High 62.2%267.1
g15653.t1
Nepeta mussiniiPhenylpropanoid · CSEblast+hmm High 57.1%267.1
evm.model.LG02.2293
Clinopodium barosmumPhenylpropanoid · CSEblast+hmm High 59.7%267.0
g41907.t1
Nepeta catariaPhenylpropanoid · CSEblast+hmm High 59.2%267.0
LAAN_c52349_g1_i1_len_1931
Lavandula angustifoliaPhenylpropanoid · CSEblast+hmm High 60.2%266.9