LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

HCT

Hydroxycinnamoyl-CoA shikimate/quinate transferase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmePhenylpropanoid biosynthesis
Public candidate IDs
3,979
Species with candidates
80
Species with assignments
80
Source assignments
11,417
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,979 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
0.351 · higher in Lamiaceae
Prevalence delta
0
Comparable source
PlantSME family assignments
Comparable source count
11,417
Public candidate count
3,979
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 76050 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 67950 Available
Pogostemon cablinLamioideae · Pogostemon Stable locus 42150 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 29050 Available
Teucrium marumAjugoideae · Teucrium Stable locus 27950 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 25950 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 25250 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 23550 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 23450 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 21750 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 21250 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 20350 Available
Thymus quinquecostatusNepetoideae · Thymus Stable locus 19850 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 19750 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 19350 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 19350 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 17750 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 17650 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 17450 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 16050 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 15850 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 15550 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 15150 Available
Prunella vulgarisNepetoideae · Prunella Stable locus 14550 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 14150 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 14150 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 13450 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 12950 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 12650 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 12450 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 12450 Available
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 12450 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 12450 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 12350 Available
Marmoritis complanataNepetoideae · Marmoritis Stable locus 12150 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 11350 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 11350 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 11150 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 10850 No matrix
Isodon serraNepetoideae · Isodon Stable locus 10750 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 10650 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 10450 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 10450 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 10350 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 10150 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 10150 No matrix
Lamium albumLamioideae · Lamium Stable locus 9850 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 9850 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 9850 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 9550 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 9550 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 9450 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 9350 Available
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 9350 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 9250 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 9250 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 9150 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 9150 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 8650 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 8550 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 8350 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 8350 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 8150 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 8050 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 7950 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 7850 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 7650 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 7550 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 7450 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 7450 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 7250 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 7150 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 7050 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 7050 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 7050 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 6950 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 6750 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 6050 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 5550 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 2929 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
PLBA_c96018_g1_i1_len_1622
Plectranthus barbatusPhenylpropanoid · HCTblast+hmm High 31.3%538.8
HYSU_c9421_g1_i1_len_1450
Hyptis suaveolensPhenylpropanoid · HCTblast+hmm High 30.8%536.8
GLHE_c64816_g1_i1_len_1758
Glechoma hederaceaPhenylpropanoid · HCTblast+hmm High 31.5%535.4
GMPH_c24866_g1_i2_len_1712
Gmelina philippensisPhenylpropanoid · HCTblast+hmm High 32.0%535.2
COCA_c67240_g1_i1_len_1713
Collinsonia canadensisPhenylpropanoid · HCTblast+hmm High 32.1%533.7
GlLon_018240-T1
Glechoma longitubaPhenylpropanoid · HCTblast+hmm High 31.7%533.5
ROMY_c79774_g1_i2_len_1577
Rotheca myricoidesPhenylpropanoid · HCTblast+hmm High 30.9%533.5
g22437.t1
Hyssopus officinalisPhenylpropanoid · HCTblast+hmm High 32.0%533.1
GWHPBJVA016084
Thymus quinquecostatusPhenylpropanoid · HCTblast+hmm High 31.6%532.8
375376.g2.t1
Ocimum basilicumPhenylpropanoid · HCTblast+hmm High 31.7%532.7
THVU_c71436_g2_i1_len_1577
Thymus vulgarisPhenylpropanoid · HCTblast+hmm High 32.2%531.1
Mc7g07220.1
Mosla chinensisPhenylpropanoid · HCTblast+hmm High 32.4%530.6
scutellaria_barbata_GWHPAOTP001236
Scutellaria barbataPhenylpropanoid · HCTblast+hmm High 30.2%530.6
Pat_A28G089400.m1
Pogostemon cablinPhenylpropanoid · HCTblast+hmm High 31.6%530.5
Ms_c012g00921.1
Mosla soochowensisPhenylpropanoid · HCTblast+hmm High 31.8%530.4
VIAG_c43488_g2_i1_len_1684
Vitex agnus-castusPhenylpropanoid · HCTblast+hmm High 30.0%529.5
AG34_scaffold5_12640T
Agastache rugosaPhenylpropanoid · HCTblast+hmm High 31.7%529.4
AGFO_c26668_g1_i1_len_1671
Agastache foeniculumPhenylpropanoid · HCTblast+hmm High 31.7%529.3
rna-gnl|WGS:QFCC|chr18_27041261_27043805.mrna1
Perilla frutescensPhenylpropanoid · HCTblast+hmm High 31.7%529.3
Dru_3G0021050.1
Dracocephalum rupestrePhenylpropanoid · HCTblast+hmm High 31.1%529.1
Pat_B27G103700.m1
Pogostemon cablinPhenylpropanoid · HCTblast+hmm High 31.6%528.5
ORMA_c52677_g1_i2_len_1673
Origanum majoranaPhenylpropanoid · HCTblast+hmm High 32.1%528.4
rna-gnl|WGS:QFCC|chr14_28183839_28186755.mrna1
Perilla frutescensPhenylpropanoid · HCTblast+hmm High 32.2%528.4
rna-gnl|WGS:QIYW|chr10_24424756_24427683.mrna1
Perilla citriodoraPhenylpropanoid · HCTblast+hmm High 32.2%528.4
rna-gnl|WGS:QIYW|chr10_24424756_24427683.mrna1
Perilla frutescens var. hirtellaPhenylpropanoid · HCTblast+hmm High 32.2%528.4
Roff13680171800
Salvia rosmarinusPhenylpropanoid · HCTblast+hmm High 32.1%528.2
Pat_A27G072400.m1
Pogostemon cablinPhenylpropanoid · HCTblast+hmm High 31.4%528.0
LECA_c24212_g1_i1_len_1709
Leonurus cardiacaPhenylpropanoid · HCTblast+hmm High 31.7%527.3
SAOF_c23882_g1_i2_len_1677
Salvia officinalisPhenylpropanoid · HCTblast+hmm High 31.9%526.9
KAL1566742.1
Salvia divinorumPhenylpropanoid · HCTblast+hmm High 31.1%526.5
Roff13680171780
Salvia rosmarinusPhenylpropanoid · HCTblast+hmm High 32.0%526.3
Teucrium_chamaedrys__Tcha183790
Teucrium chamaedrysPhenylpropanoid · HCTblast+hmm High 30.4%525.9
Roff8110496920
Salvia rosmarinusPhenylpropanoid · HCTblast+hmm High 30.6%525.6
383685.g61.t1
Ocimum basilicumPhenylpropanoid · HCTblast+hmm High 32.0%525.1
AJRE_c44636_g1_i1_len_1648
Ajuga reptansPhenylpropanoid · HCTblast+hmm High 30.6%525.1
PRLA_c70807_g1_i3_len_3271
Prostanthera lasianthosPhenylpropanoid · HCTblast+hmm High 31.6%525.0
Smil06G0019870.1.v1.484
Salvia miltiorrhizaPhenylpropanoid · HCTblast+hmm High 32.0%525.0
g22381.t1
Nepeta catariaPhenylpropanoid · HCTblast+hmm High 31.0%524.9
MODI_c35883_g1_i1_len_1802
Monarda didymaPhenylpropanoid · HCTblast+hmm High 30.9%524.8
evm.model.Chr01.575
Callicarpa nudifloraPhenylpropanoid · HCTblast+hmm High 34.0%524.8
g18120.t1
Ajuga decumbensPhenylpropanoid · HCTblast+hmm High 32.1%524.8
MESP_c36467_g1_i1_len_1919
Mentha spicataPhenylpropanoid · HCTblast+hmm High 31.4%524.4
PEBA_c38455_g4_i1_len_1665
Petraeovitex bambusetoriumPhenylpropanoid · HCTblast+hmm High 30.9%524.2
KAL8550098.1
Phlomoides rotataPhenylpropanoid · HCTblast+hmm High 31.6%524.1
HOSA_c45512_g1_i1_len_1720
Holmskioldia sanguineaPhenylpropanoid · HCTblast+hmm High 31.7%524.0
COPY_c72383_g1_i1_len_1777
Cornutia pyramidataPhenylpropanoid · HCTblast+hmm High 30.9%523.9
g16179.t1
Salvia sclareaPhenylpropanoid · HCTblast+hmm High 30.8%523.6
383957.g150.t1
Ocimum basilicumPhenylpropanoid · HCTblast+hmm High 30.9%523.3
Mlonscaffold_2_length_455260290066750.1.v1.326
Mentha longifoliaPhenylpropanoid · HCTblast+hmm High 31.1%523.1
g17961.t1
Ajuga decumbensPhenylpropanoid · HCTblast+hmm High 32.5%523.0