LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

HCT

Hydroxycinnamoyl-CoA shikimate/quinate transferase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmePhenylpropanoid biosynthesis
Public candidate IDs
3,979
Species with candidates
80
Species with assignments
80
Source assignments
11,417
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,979 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
0.351 · higher in Lamiaceae
Prevalence delta
0
Comparable source
PlantSME family assignments
Comparable source count
11,417
Public candidate count
3,979
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 76050 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 67950 Available
Pogostemon cablinLamioideae · Pogostemon Stable locus 42150 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 29050 Available
Teucrium marumAjugoideae · Teucrium Stable locus 27950 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 25950 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 25250 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 23550 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 23450 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 21750 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 21250 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 20350 Available
Thymus quinquecostatusNepetoideae · Thymus Stable locus 19850 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 19750 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 19350 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 19350 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 17750 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 17650 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 17450 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 16050 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 15850 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 15550 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 15150 Available
Prunella vulgarisNepetoideae · Prunella Stable locus 14550 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 14150 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 14150 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 13450 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 12950 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 12650 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 12450 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 12450 Available
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 12450 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 12450 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 12350 Available
Marmoritis complanataNepetoideae · Marmoritis Stable locus 12150 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 11350 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 11350 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 11150 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 10850 No matrix
Isodon serraNepetoideae · Isodon Stable locus 10750 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 10650 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 10450 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 10450 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 10350 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 10150 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 10150 No matrix
Lamium albumLamioideae · Lamium Stable locus 9850 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 9850 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 9850 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 9550 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 9550 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 9450 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 9350 Available
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 9350 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 9250 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 9250 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 9150 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 9150 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 8650 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 8550 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 8350 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 8350 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 8150 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 8050 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 7950 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 7850 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 7650 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 7550 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 7450 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 7450 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 7250 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 7150 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 7050 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 7050 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 7050 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 6950 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 6750 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 6050 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 5550 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 2929 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Smil03G0021250.1.v1.484
Salvia miltiorrhizaPhenylpropanoid · HCTblast+hmm High 31.4%421.1
Sbow05G0018780.1
Salvia bowleyanaPhenylpropanoid · HCTblast+hmm High 31.4%421.0
805.g53.t1
Ocimum basilicumPhenylpropanoid · HCTblast+hmm High 33.5%420.8
363770.g4.t1
Ocimum basilicumPhenylpropanoid · HCTblast+hmm High 30.3%420.7
GLHE_c56116_g1_i1_len_1494
Glechoma hederaceaPhenylpropanoid · HCTblast+hmm High 30.9%420.7
Ls1g28310.1
Leonurus sibiricusPhenylpropanoid · HCTblast+hmm High 30.8%420.7
MODI_c61618_g1_i1_len_1166
Monarda didymaPhenylpropanoid · HCTblast+hmm High 32.7%420.6
KAL1540203.1
Salvia divinorumPhenylpropanoid · HCTblast+hmm High 32.4%420.5
539.g32.t1
Ocimum basilicumPhenylpropanoid · HCTblast+hmm High 32.4%420.0
XP_042012950.1
Salvia splendensPhenylpropanoid · HCTblast+hmm High 32.1%420.0
Dru_3G0013080.1
Dracocephalum rupestrePhenylpropanoid · HCTblast+hmm High 31.1%419.9
Roff25090332810
Salvia rosmarinusPhenylpropanoid · HCTblast+hmm High 55.3%419.3
evm.model.LG09.1388
Clinopodium barosmumPhenylpropanoid · HCTblast+hmm High 36.7%419.3
g19548.t1_g19549.t1
Nepeta mussiniiPhenylpropanoid · HCTblast+hmm High 31.7%418.9
Clgra_040182-T1
Clinopodium gracilePhenylpropanoid · HCTblast+hmm High 30.2%418.8
Teucrium_chamaedrys__Tcha175108
Teucrium chamaedrysPhenylpropanoid · HCTblast+hmm High 31.5%418.7
Teucrium_chamaedrys__Tcha13225
Teucrium chamaedrysPhenylpropanoid · HCTblast+hmm High 31.7%418.5
1846.g44.t1
Ocimum basilicumPhenylpropanoid · HCTblast+hmm High 33.6%417.7
Clgra_001217-T1
Clinopodium gracilePhenylpropanoid · HCTblast+hmm High 51.5%417.7
Dru_5G0029200.1
Dracocephalum rupestrePhenylpropanoid · HCTblast+hmm High 31.0%417.2
XP_042058658.1
Salvia splendensPhenylpropanoid · HCTblast+hmm High 54.8%417.1
Roff3885760455060
Salvia rosmarinusPhenylpropanoid · HCTblast+hmm High 32.8%416.2
XP_047967117.1
Salvia hispanicaPhenylpropanoid · HCTblast+hmm High 31.9%416.1
GlLon_030068-T1
Glechoma longitubaPhenylpropanoid · HCTblast+hmm High 32.6%416.0
GlLon_034023-T1
Glechoma longitubaPhenylpropanoid · HCTblast+hmm High 34.5%415.7
g50300.t1_g50301.t1
Nepeta catariaPhenylpropanoid · HCTblast+hmm High 31.7%415.5
Lj4g02190.1
Leonurus japonicusPhenylpropanoid · HCTblast+hmm High 53.8%415.4
Teum.S013300.1
Teucrium marumPhenylpropanoid · HCTblast+hmm High 62.5%415.4
PRLA_c66110_g2_i2_len_1636
Prostanthera lasianthosPhenylpropanoid · HCTblast+hmm High 31.4%415.3
Teucrium_chamaedrys__Tcha56299
Teucrium chamaedrysPhenylpropanoid · HCTblast+hmm High 62.3%414.1
COTO_c32544_g1_i1_len_1628
Congea tomentosaPhenylpropanoid · HCTblast+hmm High 60.8%413.8
Dru_1G0021610.1
Dracocephalum rupestrePhenylpropanoid · HCTblast+hmm High 33.0%413.4
Ms_c001g01451.1
Mosla soochowensisPhenylpropanoid · HCTblast+hmm High 30.4%413.4
STOF_c64811_g2_i1_len_1538
Stachys officinalisPhenylpropanoid · HCTblast+hmm High 60.7%413.3
evm.model.LG13.1159
Clinopodium barosmumPhenylpropanoid · HCTblast+hmm High 37.8%413.3
Mlonscaffold_2_length_455260290066480.1.v1.326
Mentha longifoliaPhenylpropanoid · HCTblast+hmm High 30.7%413.2
PLBA_c43273_g1_i1_len_1523
Plectranthus barbatusPhenylpropanoid · HCTblast+hmm High 82.5%413.2
HYSU_c75351_g1_i1_len_1706
Hyptis suaveolensPhenylpropanoid · HCTblast+hmm High 57.4%413.1
MODI_c40531_g1_i3_len_1565
Monarda didymaPhenylpropanoid · HCTblast+hmm High 54.9%412.7
Pat_B07G168700.m1
Pogostemon cablinPhenylpropanoid · HCTblast+hmm High 56.2%412.4
Pat_A07G182800.m1
Pogostemon cablinPhenylpropanoid · HCTblast+hmm High 55.8%412.2
SAOF_c34360_g1_i1_len_1562
Salvia officinalisPhenylpropanoid · HCTblast+hmm High 52.0%412.1
XP_047938943.1
Salvia hispanicaPhenylpropanoid · HCTblast+hmm High 56.6%412.1
Lj4g02210.1
Leonurus japonicusPhenylpropanoid · HCTblast+hmm High 83.6%411.9
GWHPBJVA022759
Thymus quinquecostatusPhenylpropanoid · HCTblast+hmm High 55.0%411.6
g9211.t1
Nepeta mussiniiPhenylpropanoid · HCTblast+hmm High 31.4%411.4
g9211.t1.1.5b2c7c7d
Nepeta mussiniiPhenylpropanoid · HCTblast+hmm High 31.4%411.4
Teucrium_chamaedrys__Tcha10329
Teucrium chamaedrysPhenylpropanoid · HCTblast+hmm High 51.4%411.3
549.g150.t1
Ocimum basilicumPhenylpropanoid · HCTblast+hmm High 83.2%411.0
AG34_scaffold5_20290T
Agastache rugosaPhenylpropanoid · HCTblast+hmm High 31.2%411.0