Pathway-family scientific record

PAL

Phenylalanine ammonia-lyase family

This module includes candidate identifiers supported by the bundled gene-tree screening workflow.

Stable locus gene treeRosmarinic-acid biosynthesis
Public candidate IDs
97
Species with candidates
13
Species with assignments
17
Source assignments
201
Gene-tree candidates
110
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers97 public species-linked identifiers can be inspected.
GTGene-tree workflow110 comparable source candidates; 74 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy10 clusters across 2 species; maximum cluster size 4.

Comparative signature

Lamiaceae comparison fields

Rate delta
0.01 · higher in Lamiaceae
Prevalence delta
0
Comparable source
Comparable gene-tree evidence
Comparable source count
110
Public candidate count
97
Evidence mode
gene tree

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 4736 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 1311 Available
Tectona grandisTectonoideae · Tectona Stable locus 108 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 106 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 96 Available
Salvia bowleyanaNepetoideae · Salvia Stable locus 75 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 94 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 84 Available
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 84 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 64 Available
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 343 Available
Origanum vulgareNepetoideae · Origanum Stable locus 103 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 83 Available
Salvia hispanicaNepetoideae · Salvia Reference-only 70 No matrix —
Salvia splendensNepetoideae · Salvia Reference-only 70 No matrix —
Salvia divinorumNepetoideae · Salvia Reference-only 60 No matrix —
Phlomoides rotataLamioideae · Phlomoides Reference-only 20 No matrix —

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Ocimum basilicumRosmarinic acid · PALblast+hmm High 78.2%117.5
Nepeta catariaRosmarinic acid · PALblast+hmm High 85.7%116.8
Pogostemon cablinRosmarinic acid · PALblast+hmm High 86.0%116.5
Salvia bowleyanaRosmarinic acid · PALblast+hmm High 85.8%116.5
Salvia bowleyanaRosmarinic acid · PALblast+hmm High 86.0%116.5
Salvia miltiorrhizaRosmarinic acid · PALblast+hmm High 85.8%116.5
Nepeta mussiniiRosmarinic acid · PALblast+hmm High 86.3%116.5
Ocimum basilicumRosmarinic acid · PALblast+hmm High 86.0%116.5
Ocimum basilicumRosmarinic acid · PALblast+hmm High 86.2%116.5
Origanum vulgareRosmarinic acid · PALblast+hmm High 85.0%116.5
Salvia rosmarinusRosmarinic acid · PALblast+hmm High 86.0%116.5
Pogostemon cablinRosmarinic acid · PALblast+hmm High 82.0%116.4
Pogostemon cablinRosmarinic acid · PALblast+hmm High 86.5%116.4
Mentha longifoliaRosmarinic acid · PALblast+hmm High 86.3%116.3
Pogostemon cablinRosmarinic acid · PALblast+hmm High 84.0%116.2
Pogostemon cablinRosmarinic acid · PALblast+hmm High 88.9%116.1
Perilla citriodoraRosmarinic acid · PALblast+hmm High 84.9%115.9
Callicarpa americanaRosmarinic acid · PALblast+hmm High 85.0%115.6
Callicarpa americanaRosmarinic acid · PALblast+hmm High 86.5%115.6
Ocimum basilicumRosmarinic acid · PALblast+hmm High 81.2%115.6
Scutellaria barbataRosmarinic acid · PALblast+hmm High 83.9%115.6
Tectona grandisRosmarinic acid · PALblast+hmm High 86.4%115.6
Tectona grandisRosmarinic acid · PALblast+hmm High 82.2%115.6
Tectona grandisRosmarinic acid · PALblast+hmm High 82.5%115.6
Tectona grandisRosmarinic acid · PALblast+hmm High 80.7%115.6
Pogostemon cablinRosmarinic acid · PALblast+hmm High 82.2%115.5
Tectona grandisRosmarinic acid · PALblast+hmm High 86.3%115.5
Pogostemon cablinRosmarinic acid · PALblast+hmm High 84.8%115.3
Pogostemon cablinRosmarinic acid · PALblast+hmm High 84.7%115.3
Salvia rosmarinusRosmarinic acid · PALblast+hmm High 86.0%114.3
Scutellaria barbataRosmarinic acid · PALblast+hmm High 85.7%114.3
Scutellaria barbataRosmarinic acid · PALblast+hmm High 86.2%114.3
Ocimum basilicumRosmarinic acid · PALblast+hmm High 87.2%114.1
Origanum vulgareRosmarinic acid · PALblast+hmm High 85.4%114.1
Perilla citriodoraRosmarinic acid · PALblast+hmm High 86.2%114.1
Pogostemon cablinRosmarinic acid · PALblast+hmm High 84.7%114.0
Mentha longifoliaRosmarinic acid · PALblast+hmm High 85.4%113.9
Pogostemon cablinRosmarinic acid · PALblast+hmm High 82.2%113.8
Callicarpa americanaRosmarinic acid · PALblast+hmm High 81.4%113.6
Callicarpa americanaRosmarinic acid · PALblast+hmm High 81.4%113.6
Mentha longifoliaRosmarinic acid · PALblast+hmm High 82.1%113.1
Salvia miltiorrhizaRosmarinic acid · PALblast+hmm High 80.9%113.1
Salvia rosmarinusRosmarinic acid · PALblast+hmm High 81.9%113.1
Ocimum basilicumRosmarinic acid · PALblast+hmm High 82.4%112.9
Ocimum basilicumRosmarinic acid · PALblast+hmm High 86.2%112.9
Perilla citriodoraRosmarinic acid · PALblast+hmm High 86.1%112.9
Tectona grandisRosmarinic acid · PALblast+hmm High 81.4%112.4
Salvia bowleyanaRosmarinic acid · PALblast+hmm High 85.7%112.0
Salvia bowleyanaRosmarinic acid · PALblast+hmm High 85.6%112.0
Salvia miltiorrhizaRosmarinic acid · PALblast+hmm High 85.7%112.0