Pathway-family scientific record

PAL

Phenylalanine ammonia-lyase family

This module includes candidate identifiers supported by the bundled gene-tree screening workflow.

Stable locus gene treeRosmarinic-acid biosynthesis
Public candidate IDs
97
Species with candidates
13
Species with assignments
17
Source assignments
201
Gene-tree candidates
110
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers97 public species-linked identifiers can be inspected.
GTGene-tree workflow110 comparable source candidates; 74 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy10 clusters across 2 species; maximum cluster size 4.

Comparative signature

Lamiaceae comparison fields

Rate delta
0.01 · higher in Lamiaceae
Prevalence delta
0
Comparable source
Comparable gene-tree evidence
Comparable source count
110
Public candidate count
97
Evidence mode
gene tree

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 4736 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 1311 Available
Tectona grandisTectonoideae · Tectona Stable locus 108 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 106 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 96 Available
Salvia bowleyanaNepetoideae · Salvia Stable locus 75 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 94 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 84 Available
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 84 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 64 Available
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 343 Available
Origanum vulgareNepetoideae · Origanum Stable locus 103 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 83 Available
Salvia hispanicaNepetoideae · Salvia Reference-only 70 No matrix —
Salvia splendensNepetoideae · Salvia Reference-only 70 No matrix —
Salvia divinorumNepetoideae · Salvia Reference-only 60 No matrix —
Phlomoides rotataLamioideae · Phlomoides Reference-only 20 No matrix —

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Nepeta mussiniiRosmarinic acid · PALblast+hmm High 87.3%112.0
Salvia rosmarinusRosmarinic acid · PALblast+hmm High 86.0%112.0
Nepeta catariaRosmarinic acid · PALblast+hmm High 85.1%111.7
Nepeta catariaRosmarinic acid · PALblast+hmm High 81.5%111.7
Nepeta catariaRosmarinic acid · PALblast+hmm High 81.6%111.7
Nepeta catariaRosmarinic acid · PALblast+hmm High 85.5%111.7
Nepeta mussiniiRosmarinic acid · PALblast+hmm High 82.0%111.7
Pogostemon cablinRosmarinic acid · PALblast+hmm High 81.2%109.5
Callicarpa americanaRosmarinic acid · PALblast+hmm High 82.0%108.3
Callicarpa americanaRosmarinic acid · PALblast+hmm High 81.7%108.3
Pogostemon cablinRosmarinic acid · PALblast+hmm High 78.6%108.2
Scutellaria barbataRosmarinic acid · PALblast+hmm High 72.3%104.1
Pogostemon cablinRosmarinic acid · PALblast+hmm High 78.0%102.5
Pogostemon cablinRosmarinic acid · PALblast+hmm High 84.3%102.2
Origanum vulgareRosmarinic acid · PALblast+hmm High 74.6%101.5
Ocimum basilicumRosmarinic acid · PALblast+hmm High 71.2%90.3
Pogostemon cablinRosmarinic acid · PALblast+hmm High 86.3%66.1
Ocimum basilicumRosmarinic acid · PALblast+hmm Medium 70.3%19.1
Pogostemon cablinRosmarinic acid · PALblast Medium 37.9%—
Pogostemon cablinRosmarinic acid · PALblast Medium 72.8%—
Pogostemon cablinRosmarinic acid · PALblast Medium 73.2%—
Pogostemon cablinRosmarinic acid · PALblast Medium 57.9%—
Pogostemon cablinRosmarinic acid · PALblast Medium 70.6%—
Pogostemon cablinRosmarinic acid · PALblast Medium 43.4%—
Pogostemon cablinRosmarinic acid · PALblast Medium 57.8%—
Pogostemon cablinRosmarinic acid · PALblast Medium 59.6%—
Pogostemon cablinRosmarinic acid · PALblast Medium 71.3%—
Pogostemon cablinRosmarinic acid · PALblast Medium 68.5%—
Pogostemon cablinRosmarinic acid · PALblast Medium 74.7%—
Pogostemon cablinRosmarinic acid · PALblast Medium 63.4%—
Pogostemon cablinRosmarinic acid · PALblast Medium 61.6%—
Pogostemon cablinRosmarinic acid · PALblast Medium 83.0%—
Pogostemon cablinRosmarinic acid · PALblast Medium 72.5%—
Pogostemon cablinRosmarinic acid · PALblast Medium 85.2%—
Pogostemon cablinRosmarinic acid · PALblast Medium 65.5%—
Pogostemon cablinRosmarinic acid · PALblast Medium 87.2%—
Pogostemon cablinRosmarinic acid · PALblast Medium 80.2%—
Pogostemon cablinRosmarinic acid · PALblast Medium 71.2%—
Pogostemon cablinRosmarinic acid · PALblast Medium 60.6%—
Salvia bowleyanaRosmarinic acid · PALblast Medium 67.5%—
Nepeta catariaRosmarinic acid · PALblast Medium 78.6%—
Nepeta mussiniiRosmarinic acid · PALblast Medium 79.1%—
Ocimum basilicumRosmarinic acid · PALblast Medium 59.5%—
Ocimum basilicumRosmarinic acid · PALblast Medium 60.7%—
Perilla citriodoraRosmarinic acid · PALblast Medium 73.2%—
Tectona grandisRosmarinic acid · PALblast Medium 74.6%—
Tectona grandisRosmarinic acid · PALblast Medium 62.2%—