Pathway-family scientific record

`CAS`

Cycloartenol synthase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidates Compare species CSV

Stable locus plantsmeSteroid and sterol biosynthesis

Public candidate IDs: 3,935
Species with candidates: 80
Species with assignments: 80
Source assignments: 8,852
Gene-tree candidates: 0
Motif candidates: 0

Evidence profile

Available evidence layers

◆Candidate identifiers3,935 public species-linked identifiers can be inspected.

GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.

MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.

100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta: Not calculated
Prevalence delta: Not calculated
Comparable source: PlantSME family assignments
Comparable source count: 8,852
Public candidate count: 3,935
Evidence mode: plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

Species	Evidence state	Source count	Candidate IDs	Expression
Pogostemon cablinLamioideae · Pogostemon	Stable locus	632	50	Available
Stenogyne calaminthoidesLamioideae · Stenogyne	Stable locus	629	50	No matrix
Ajuga decumbensAjugoideae · Ajuga	Stable locus	321	50	No matrix
Teucrium chamaedrysAjugoideae · Teucrium	Stable locus	320	50	No matrix
Rotheca myricoidesAjugoideae · Rotheca	Stable locus	256	50	No matrix
Ocimum basilicumNepetoideae · Ocimum	Stable locus	234	50	Available
Teucrium marumAjugoideae · Teucrium	Stable locus	208	50	No matrix
Prunella vulgarisNepetoideae · Prunella	Stable locus	169	50	No matrix
Callicarpa americanaCallicarpoideae · Callicarpa	Stable locus	165	50	No matrix
Plectranthus barbatusNepetoideae · Plectranthus	Stable locus	155	50	No matrix
Nepeta catariaNepetoideae · Nepeta	Stable locus	149	50	Available
Salvia splendensNepetoideae · Salvia	Stable locus	147	50	No matrix
Hyssopus officinalisNepetoideae · Hyssopus	Stable locus	142	50	No matrix
Salvia hispanicaNepetoideae · Salvia	Stable locus	136	50	No matrix
Mentha x piperitaNepetoideae · Mentha	Stable locus	132	50	No matrix
Elsholtzia splendensNepetoideae · Elsholtzia	Stable locus	124	50	No matrix
Westringia fruticosaProstantheroideae · Westringia	Stable locus	121	50	No matrix
Collinsonia canadensisNepetoideae · Collinsonia	Stable locus	120	50	No matrix
Thymus quinquecostatusNepetoideae · Thymus	Stable locus	119	50	No matrix
Mosla chinensisNepetoideae · Mosla	Stable locus	118	50	No matrix
Lavandula angustifoliaNepetoideae · Lavandula	Stable locus	116	50	No matrix
Perilla frutescensNepetoideae · Perilla	Stable locus	116	50	No matrix
Vitex agnus-castusViticoideae · Vitex	Stable locus	116	50	No matrix
Salvia divinorumNepetoideae · Salvia	Stable locus	113	50	No matrix
Phlomoides rotataLamioideae · Phlomoides	Stable locus	110	50	No matrix
Glechoma longitubaNepetoideae · Glechoma	Stable locus	108	50	No matrix
Nepeta mussiniiNepetoideae · Nepeta	Stable locus	107	50	Available
Dracocephalum rupestreNepetoideae · Dracocephalum	Stable locus	105	50	No matrix
Isodon serraNepetoideae · Isodon	Stable locus	97	50	No matrix
Phlomis fruticosaLamioideae · Phlomis	Stable locus	95	50	No matrix
Salvia miltiorrhizaNepetoideae · Salvia	Stable locus	93	50	Available
Tectona grandisTectonoideae · Tectona	Stable locus	93	50	Available
Stachys officinalisLamioideae · Stachys	Stable locus	90	50	No matrix
Mentha spicataNepetoideae · Mentha	Stable locus	89	50	No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera	Stable locus	89	50	No matrix
Ajuga reptansAjugoideae · Ajuga	Stable locus	88	50	No matrix
Isodon lophanthoidesNepetoideae · Isodon	Stable locus	84	50	No matrix
Mosla soochowensisNepetoideae · Mosla	Stable locus	83	50	No matrix
Salvia bowleyanaNepetoideae · Salvia	Stable locus	82	50	No matrix
Premna microphyllaPremnoideae · Premna	Stable locus	81	50	No matrix
Glechoma hederaceaNepetoideae · Glechoma	Stable locus	80	50	No matrix
Marmoritis complanataNepetoideae · Marmoritis	Stable locus	80	50	No matrix
Teucrium canadenseAjugoideae · Teucrium	Stable locus	79	50	No matrix
Monarda didymaNepetoideae · Monarda	Stable locus	78	50	No matrix
Origanum majoranaNepetoideae · Origanum	Stable locus	78	50	No matrix
Origanum vulgareNepetoideae · Origanum	Stable locus	76	50	No matrix
Hyptis suaveolensNepetoideae · Hyptis	Stable locus	74	50	No matrix
Salvia rosmarinusNepetoideae · Salvia	Stable locus	74	50	Available
Callicarpa nudifloraCallicarpoideae · Callicarpa	Stable locus	73	50	No matrix
Perilla citriodoraNepetoideae · Perilla	Stable locus	71	50	No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla	Stable locus	71	50	No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta	Stable locus	70	50	No matrix
Cornutia pyramidataPremnoideae · Cornutia	Stable locus	69	50	No matrix
Congea tomentosaSymphorematoideae · Congea	Stable locus	68	50	No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia	Stable locus	68	50	No matrix
Leonotis leonurusLamioideae · Leonotis	Stable locus	68	50	No matrix
Marrubium vulgareLamioideae · Marrubium	Stable locus	67	50	No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum	Stable locus	66	50	No matrix
Clinopodium barosmumNepetoideae · Clinopodium	Stable locus	66	50	No matrix
Salvia officinalisNepetoideae · Salvia	Stable locus	66	50	No matrix
Ocimum tenuiflorumNepetoideae · Ocimum	Stable locus	65	50	No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia	Stable locus	63	50	No matrix
Thymus vulgarisNepetoideae · Thymus	Stable locus	63	50	No matrix
Clinopodium gracileNepetoideae · Clinopodium	Stable locus	62	50	No matrix
Leonurus japonicusLamioideae · Leonurus	Stable locus	62	50	No matrix
Agastache rugosaNepetoideae · Agastache	Stable locus	61	50	No matrix
Leonurus sibiricusLamioideae · Leonurus	Stable locus	60	50	No matrix
Ballota pseudodictamnusLamioideae · Ballota	Stable locus	59	50	No matrix
Mentha longifoliaNepetoideae · Mentha	Stable locus	58	50	Available
Lamium albumLamioideae · Lamium	Stable locus	56	50	No matrix
Lycopus americanusNepetoideae · Lycopus	Stable locus	56	50	No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex	Stable locus	55	50	No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum	Stable locus	53	50	No matrix
Leonurus cardiacaLamioideae · Leonurus	Stable locus	49	49	No matrix
Scutellaria barbataScutellarioideae · Scutellaria	Stable locus	48	48	No matrix
Agastache foeniculumNepetoideae · Agastache	Stable locus	47	47	No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria	Stable locus	46	46	No matrix
Gmelina philippensisPremnoideae · Gmelina	Stable locus	42	42	No matrix
Melissa officinalisNepetoideae · Melissa	Stable locus	41	41	No matrix
Salvia sclareaNepetoideae · Salvia	Stable locus	12	12	No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Candidate ID	Species	Pathway / family	Evidence	Confidence	Identity	HMM score
rna-gnl\|WGS:QIYW\|chr10_48162683_48170591.mrna1	Perilla frutescens var. hirtella	Steroid / sterol · `CAS`	blast+hmm	High	71.4%	1063.2
rna-gnl\|WGS:QFCC\|chr14_04295495_04303458.mrna1	Perilla frutescens	Steroid / sterol · `CAS`	blast+hmm	High	71.6%	1062.7
MACO_g17120.t1	Marmoritis complanata	Steroid / sterol · `CAS`	blast+hmm	High	71.5%	1056.2
GWHPBJVA016542	Thymus quinquecostatus	Steroid / sterol · `CAS`	blast+hmm	High	72.4%	1054.1
DRSE_g17995.t1	Drepanocaryum sewerzowii	Steroid / sterol · `CAS`	blast+hmm	High	72.0%	1046.6
g42243.t1.1.5b2d4a33	Nepeta cataria	Steroid / sterol · `CAS`	blast+hmm	High	83.3%	1045.8
g42243.t1.2.5b2d4a33	Nepeta cataria	Steroid / sterol · `CAS`	blast+hmm	High	83.3%	1045.8
g42243.t1.4.5b2d4a33	Nepeta cataria	Steroid / sterol · `CAS`	blast+hmm	High	83.3%	1045.8
Dru_5G0002840.1	Dracocephalum rupestre	Steroid / sterol · `CAS`	blast+hmm	High	71.2%	1045.7
g25922.t1	Nepeta cataria	Steroid / sterol · `CAS`	blast+hmm	High	70.7%	1045.0
ORMA_c53726_g2_i6_len_2831	Origanum majorana	Steroid / sterol · `CAS`	blast+hmm	High	72.6%	1043.6
g10495.t1.1.5b2c7c7d	Nepeta mussinii	Steroid / sterol · `CAS`	blast+hmm	High	83.1%	1039.7
g10495.t1.2.5b2c7c7d	Nepeta mussinii	Steroid / sterol · `CAS`	blast+hmm	High	83.1%	1039.7
Lj9g04740.1	Leonurus japonicus	Steroid / sterol · `CAS`	blast+hmm	High	70.8%	1038.9
Ls9g18360.1	Leonurus sibiricus	Steroid / sterol · `CAS`	blast+hmm	High	70.8%	1036.7
Smil06G0014900.1.v1.484	Salvia miltiorrhiza	Steroid / sterol · `CAS`	blast+hmm	High	72.6%	1036.4
g42243.t1.5.5b2d4a33	Nepeta cataria	Steroid / sterol · `CAS`	blast+hmm	High	82.9%	1036.1
evm.model.LG13.628	Clinopodium barosmum	Steroid / sterol · `CAS`	blast+hmm	High	71.5%	1034.3
AG34_scaffold5_02530T	Agastache rugosa	Steroid / sterol · `CAS`	blast+hmm	High	71.9%	1031.9
382932.g11.t1	Ocimum basilicum	Steroid / sterol · `CAS`	blast+hmm	High	67.8%	1030.9
g10495.t1.4.5b2c7c7d	Nepeta mussinii	Steroid / sterol · `CAS`	blast+hmm	High	82.7%	1029.4
Roff15910210240	Salvia rosmarinus	Steroid / sterol · `CAS`	blast+hmm	High	71.9%	1027.6
Teucrium_chamaedrys__Tcha102822	Teucrium chamaedrys	Steroid / sterol · `CAS`	blast+hmm	High	70.4%	1027.6
g4467.t1_g4469.t1.2.5b44e31c	Hyssopus officinalis	Steroid / sterol · `CAS`	blast+hmm	High	70.8%	1027.5
Teucrium_chamaedrys__Tcha192484	Teucrium chamaedrys	Steroid / sterol · `CAS`	blast+hmm	High	70.4%	1026.7
g4467.t1_g4469.t1	Hyssopus officinalis	Steroid / sterol · `CAS`	blast+hmm	High	70.8%	1026.5
scutellaria_barbata_GWHPAOTP016030	Scutellaria barbata	Steroid / sterol · `CAS`	blast+hmm	High	72.0%	1024.6
Teum.S054860.2	Teucrium marum	Steroid / sterol · `CAS`	blast+hmm	High	70.3%	1023.8
Teucrium_chamaedrys__Tcha87816	Teucrium chamaedrys	Steroid / sterol · `CAS`	blast+hmm	High	70.3%	1023.4
ocimum_sanctum_Ote100207620091	Ocimum tenuiflorum	Steroid / sterol · `CAS`	blast+hmm	High	67.4%	1022.6
Pat_A14G054800.m1	Pogostemon cablin	Steroid / sterol · `CAS`	blast+hmm	High	70.1%	1021.6
KAL1532951.1	Salvia divinorum	Steroid / sterol · `CAS`	blast+hmm	High	70.5%	1020.4
Pat_B14G051300.m1	Pogostemon cablin	Steroid / sterol · `CAS`	blast+hmm	High	69.8%	1019.8
ocimum_sanctum_Ote100207620191	Ocimum tenuiflorum	Steroid / sterol · `CAS`	blast+hmm	High	67.8%	1013.1
XP_042034176.1	Salvia splendens	Steroid / sterol · `CAS`	blast+hmm	High	71.2%	1012.3
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_6.1398.mRNA1	Stenogyne calaminthoides	Steroid / sterol · `CAS`	blast+hmm	High	70.4%	1007.1
3:ILLG6G135.7m1	Isodon lophanthoides	Steroid / sterol · `CAS`	blast+hmm	High	70.2%	1006.9
XP_047969390.1	Salvia hispanica	Steroid / sterol · `CAS`	blast+hmm	High	70.6%	1006.5
g44141.t1	Nepeta cataria	Steroid / sterol · `CAS`	blast+hmm	High	69.8%	1004.0
LELE_c33269_g1_i3_len_2453	Leonotis leonurus	Steroid / sterol · `CAS`	blast+hmm	High	69.9%	1001.0
KAL8499866.1	Phlomoides rotata	Steroid / sterol · `CAS`	blast+hmm	High	81.1%	993.8
evm.model.ptg000019l.213	Isodon serra	Steroid / sterol · `CAS`	blast+hmm	High	70.3%	990.5
Mlonscaffold_3_length_454607550084170.1.v1.326	Mentha longifolia	Steroid / sterol · `CAS`	blast+hmm	High	81.1%	988.2
Sch000005496	Schizonepeta tenuifolia	Steroid / sterol · `CAS`	blast+hmm	High	70.2%	980.9
ocimum_sanctum_Ote100156430181	Ocimum tenuiflorum	Steroid / sterol · `CAS`	blast+hmm	High	75.0%	978.1
g10495.t1.3.5b2c7c7d	Nepeta mussinii	Steroid / sterol · `CAS`	blast+hmm	High	82.5%	977.7
CAame07G0024490.v1.94	Callicarpa americana	Steroid / sterol · `CAS`	blast+hmm	High	83.6%	975.2
CAame07G0024500.v1.94	Callicarpa americana	Steroid / sterol · `CAS`	blast+hmm	High	83.6%	975.2
tectona_grandis_Tg01g10430.t1	Tectona grandis	Steroid / sterol · `CAS`	blast+hmm	High	83.7%	973.2
g10495.t1.5.5b2c7c7d	Nepeta mussinii	Steroid / sterol · `CAS`	blast+hmm	High	80.0%	970.7