LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

ROT3_CYP90C1

ROT3 / CYP90C1 enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeSteroid and sterol biosynthesis
Public candidate IDs
94
Species with candidates
70
Species with assignments
70
Source assignments
94
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers94 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
94
Public candidate count
94
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Nepeta catariaNepetoideae · Nepeta Stable locus 55 Available
Pogostemon cablinLamioideae · Pogostemon Stable locus 55 Available
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 44 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 33 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 33 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 22 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 22 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 22 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 22 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 22 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 22 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 22 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 22 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 22 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 11 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 11 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 11 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 11 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 11 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 11 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 11 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 11 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 11 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 11 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 11 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 11 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 11 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 11 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 11 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 11 No matrix
Isodon serraNepetoideae · Isodon Stable locus 11 No matrix
Lamium albumLamioideae · Lamium Stable locus 11 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 11 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 11 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 11 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 11 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 11 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 11 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 11 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 11 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 11 Available
Mentha spicataNepetoideae · Mentha Stable locus 11 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 11 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 11 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 11 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 11 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 11 Available
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 11 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 11 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 11 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 11 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 11 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 11 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 11 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 11 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 11 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 11 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 11 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 11 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 11 Available
Salvia rosmarinusNepetoideae · Salvia Stable locus 11 Available
Salvia sclareaNepetoideae · Salvia Stable locus 11 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 11 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 11 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 11 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 11 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 11 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 11 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 11 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Pat_B18G114700.m1
Pogostemon cablinSteroid / sterol · ROT3_CYP90C1blast Medium 67.7%—
ROMY_c78827_g1_i5_len_1144
Rotheca myricoidesSteroid / sterol · ROT3_CYP90C1blast Medium 56.0%—
Roff3912730468800
Salvia rosmarinusSteroid / sterol · ROT3_CYP90C1blast Medium 67.7%—
STOF_c7724_g1_i1_len_1022
Stachys officinalisSteroid / sterol · ROT3_CYP90C1blast Medium 66.9%—
Sbai6A263T57.1
Scutellaria baicalensisSteroid / sterol · ROT3_CYP90C1blast Medium 68.1%—
Sbow05G0020190.1
Salvia bowleyanaSteroid / sterol · ROT3_CYP90C1blast Medium 71.2%—
Sch000008505
Schizonepeta tenuifoliaSteroid / sterol · ROT3_CYP90C1blast Medium 69.9%—
Smil03G0019940.1.v1.484
Salvia miltiorrhizaSteroid / sterol · ROT3_CYP90C1blast Medium 70.1%—
THVU_c46941_g1_i1_len_586
Thymus vulgarisSteroid / sterol · ROT3_CYP90C1blast Medium 32.2%—
THVU_c66336_g1_i2_len_1237
Thymus vulgarisSteroid / sterol · ROT3_CYP90C1blast Medium 69.3%—
THVU_c79520_g1_i1_len_339
Thymus vulgarisSteroid / sterol · ROT3_CYP90C1blast Medium 39.3%—
WEFR_c13364_g1_i1_len_418
Westringia fruticosaSteroid / sterol · ROT3_CYP90C1blast Medium 34.2%—
WEFR_c43100_g1_i1_len_1560
Westringia fruticosaSteroid / sterol · ROT3_CYP90C1blast Medium 69.1%—
XP_042010678.1
Salvia splendensSteroid / sterol · ROT3_CYP90C1blast Medium 70.1%—
XP_042047563.1
Salvia splendensSteroid / sterol · ROT3_CYP90C1blast Medium 71.7%—
XP_047976634.1
Salvia hispanicaSteroid / sterol · ROT3_CYP90C1blast Medium 70.9%—
evm.model.Chr10.805
Callicarpa nudifloraSteroid / sterol · ROT3_CYP90C1blast Medium 72.4%—
evm.model.LG08.1765
Clinopodium barosmumSteroid / sterol · ROT3_CYP90C1blast Medium 69.3%—
evm.model.LG10.1818
Clinopodium barosmumSteroid / sterol · ROT3_CYP90C1blast Medium 70.1%—
evm.model.ptg000011l.635
Isodon serraSteroid / sterol · ROT3_CYP90C1blast Medium 69.3%—
g29585.t2
Hyssopus officinalisSteroid / sterol · ROT3_CYP90C1blast Medium 67.2%—
g29585.t2.1.5b43bdc5
Hyssopus officinalisSteroid / sterol · ROT3_CYP90C1blast Medium 67.2%—
g29585.t2.1.5b43bdc5.1.5b44e321
Hyssopus officinalisSteroid / sterol · ROT3_CYP90C1blast Medium 67.2%—
g29585.t2.1.5b43bdc5.2.5b44e321
Hyssopus officinalisSteroid / sterol · ROT3_CYP90C1blast Medium 67.2%—
g37437.t1
Nepeta catariaSteroid / sterol · ROT3_CYP90C1blast Medium 72.4%—
g37437.t1.1.5b2d4a30
Nepeta catariaSteroid / sterol · ROT3_CYP90C1blast Medium 72.9%—
g37437.t1.2.5b2d4a30
Nepeta catariaSteroid / sterol · ROT3_CYP90C1blast Medium 71.0%—
g37437.t1.3.5b2d4a30
Nepeta catariaSteroid / sterol · ROT3_CYP90C1blast Medium 72.5%—
g37437.t1.4.5b2d4a30
Nepeta catariaSteroid / sterol · ROT3_CYP90C1blast Medium 76.1%—
g9250.t1
Salvia sclareaSteroid / sterol · ROT3_CYP90C1blast Medium 67.7%—
rna-gnl|WGS:QFCC|chr07_48745831_48755289.mrna1
Perilla frutescensSteroid / sterol · ROT3_CYP90C1blast Medium 68.5%—
rna-gnl|WGS:QFCC|chr19_36744274_36753798.mrna1
Perilla frutescensSteroid / sterol · ROT3_CYP90C1blast Medium 68.5%—
rna-gnl|WGS:QIYW|chr06_49721466_49730924.mrna1
Perilla citriodoraSteroid / sterol · ROT3_CYP90C1blast Medium 68.5%—
rna-gnl|WGS:QIYW|chr06_49721466_49730924.mrna1
Perilla frutescens var. hirtellaSteroid / sterol · ROT3_CYP90C1blast Medium 68.5%—
scutellaria_barbata_GWHPAOTP024561
Scutellaria barbataSteroid / sterol · ROT3_CYP90C1blast Medium 66.9%—
tectona_grandis_Tg03g02960.t1
Tectona grandisSteroid / sterol · ROT3_CYP90C1blast Medium 72.4%—
Mlonscaffold_9_length_337380420189150.1.v1.326
Mentha longifoliaSteroid / sterol · ROT3_CYP90C1hmm Medium —26.4
Teucrium_chamaedrys__Tcha5205
Teucrium chamaedrysSteroid / sterol · ROT3_CYP90C1hmm Medium —20.0
Teum.10G004890.1
Teucrium marumSteroid / sterol · ROT3_CYP90C1hmm Medium —19.8
PEBA_c74814_g1_i1_len_306
Petraeovitex bambusetoriumSteroid / sterol · ROT3_CYP90C1hmm Medium —16.1
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_51.644.mRNA1
Stenogyne calaminthoidesSteroid / sterol · ROT3_CYP90C1hmm Medium —15.7
GWHPBJVA020673
Thymus quinquecostatusSteroid / sterol · ROT3_CYP90C1hmm Medium —15.6
ocimum_sanctum_Ote100273830001
Ocimum tenuiflorumSteroid / sterol · ROT3_CYP90C1hmm Medium —14.7
PHFR_c141165_g1_i1_len_265
Phlomis fruticosaSteroid / sterol · ROT3_CYP90C1hmm Medium —14.4