LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

SMT1_SMT2_SMT3

SMT1 / SMT2 / SMT3 enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeSteroid and sterol biosynthesis
Public candidate IDs
3,804
Species with candidates
80
Species with assignments
80
Source assignments
5,468
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,804 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
5,468
Public candidate count
3,804
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 32550 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 23750 Available
Teucrium marumAjugoideae · Teucrium Stable locus 17050 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 16750 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 15950 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 14650 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 12250 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 11350 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 11150 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 9950 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 9450 Available
Salvia rosmarinusNepetoideae · Salvia Stable locus 9050 Available
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 8350 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 8250 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 8150 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 7750 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 7650 Available
Ajuga decumbensAjugoideae · Ajuga Stable locus 7550 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 7450 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 7250 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 6850 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 6850 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 6750 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 6550 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 6550 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 6450 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 6350 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 6050 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 5950 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 5950 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 5750 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 5750 No matrix
Isodon serraNepetoideae · Isodon Stable locus 5750 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 5650 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 5650 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 5550 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 5550 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 5550 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 5550 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 5450 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 5450 No matrix
Lamium albumLamioideae · Lamium Stable locus 5350 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 5350 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 5250 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 5150 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 5150 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 5150 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 5150 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 5050 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 5050 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 4848 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 4848 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 4848 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 4848 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 4848 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 4747 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 4747 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 4747 Available
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 4646 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 4646 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 4545 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 4444 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 4444 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 4444 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 4444 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 4444 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 4242 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 4242 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 4242 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 4242 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 4242 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 4141 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 4141 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 4040 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 4040 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 4040 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 4040 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 3939 Available
Salvia officinalisNepetoideae · Salvia Stable locus 3838 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 3737 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
evm.model.LG16.57
Clinopodium barosmumSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.5%296.3
g21383.t1
Nepeta catariaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.9%296.3
rna-gnl|WGS:QFCC|chr04_07020157_07021239.mrna1
Perilla frutescensSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 86.6%296.3
rna-gnl|WGS:QIYW|chr03_61408167_61409249.mrna1
Perilla citriodoraSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 86.6%296.3
rna-gnl|WGS:QIYW|chr03_61408167_61409249.mrna1
Perilla frutescens var. hirtellaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 86.6%296.3
GLHE_c59845_g1_i2_len_1460
Glechoma hederaceaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 83.2%296.2
PEBA_c40878_g2_i1_len_1716
Petraeovitex bambusetoriumSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 86.8%295.7
TECA_c79908_g1_i1_len_1947
Teucrium canadenseSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 79.7%295.7
CAame06G0000900.v1.94
Callicarpa americanaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 86.6%295.6
MEOF_c40810_g1_i1_len_1814
Melissa officinalisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 83.8%295.5
WEFR_c48367_g1_i1_len_2229
Westringia fruticosaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 85.2%295.3
THVU_c53759_g1_i1_len_1251
Thymus vulgarisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 83.4%295.2
origanum_vulgare_404.g23.t1
Origanum vulgareSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.5%294.6
KAL1554468.1
Salvia divinorumSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.5%294.4
LAAL_c41252_g1_i1_len_1446
Lamium albumSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.0%294.4
ORMA_c54192_g2_i2_len_1238
Origanum majoranaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.3%294.3
Pat_B02G067100.m1
Pogostemon cablinSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 86.4%294.0
Dru_5G0034910.1
Dracocephalum rupestreSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 85.1%293.3
Pat_B01G076200.m1
Pogostemon cablinSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 86.2%293.3
g223.t1
Hyssopus officinalisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.8%293.3
GWHPBJVA018396
Thymus quinquecostatusSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 83.1%292.9
Sch000024045
Schizonepeta tenuifoliaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 83.9%292.9
XP_041999449.1
Salvia splendensSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.8%292.8
Clgra_005273-T1
Clinopodium gracileSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 83.8%292.6
Roff21690289890
Salvia rosmarinusSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.4%292.4
MODI_c33201_g1_i1_len_1253
Monarda didymaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.6%292.3
COCA_c63942_g1_i1_len_1380
Collinsonia canadensisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 86.0%292.2
XP_047941495.1
Salvia hispanicaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.8%292.0
evm.model.Chr02.34
Callicarpa nudifloraSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 86.2%292.0
Roff21140272430
Salvia rosmarinusSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.2%291.8
evm.model.LG20.1463
Clinopodium barosmumSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 83.7%291.8
MESP_c36940_g1_i1_len_1254
Mentha spicataSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.5%291.6
g9790.t1
Salvia sclareaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 85.0%291.1
XP_042004281.1
Salvia splendensSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.2%291.0
CLBU_c46429_g1_i1_len_1453
Clerodendrum bungeiSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 77.5%290.9
evm.model.chr6.1821
Prunella vulgarisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.2%290.3
tectona_grandis_Tg12g16810.t1
Tectona grandisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.3%290.0
LYAM_c64724_g1_i1_len_1861
Lycopus americanusSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.5%289.7
SAOF_c54503_g1_i1_len_1330
Salvia officinalisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 85.6%289.7
Pat_A02G093200.m1
Pogostemon cablinSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 85.9%289.4
g17739.t1
Ajuga decumbensSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 77.5%289.4
Sbow01G0076710.1
Salvia bowleyanaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 86.6%288.8
COTO_c8043_g1_i1_len_1657
Congea tomentosaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 86.3%288.3
SmilGWHAOSJ000000390000210.1.v1.484
Salvia miltiorrhizaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 86.6%287.5
PEAT_c23312_g1_i1_len_1313
Perovskia atriplicifoliaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 87.1%287.4
CLBU_c46429_g2_i1_len_1524
Clerodendrum bungeiSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 77.7%287.2
SmilGWHAOSJ000008780012760.1.v1.484
Salvia miltiorrhizaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 86.6%287.2
HOSA_c36182_g1_i1_len_1532
Holmskioldia sanguineaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 84.6%283.4
MEOF_c14074_g1_i2_len_1576
Melissa officinalisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 89.6%282.9
AJRE_c33698_g1_i2_len_1560
Ajuga reptansSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 78.0%280.4