LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

SMT1_SMT2_SMT3

SMT1 / SMT2 / SMT3 enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeSteroid and sterol biosynthesis
Public candidate IDs
3,804
Species with candidates
80
Species with assignments
80
Source assignments
5,468
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,804 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
5,468
Public candidate count
3,804
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 32550 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 23750 Available
Teucrium marumAjugoideae · Teucrium Stable locus 17050 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 16750 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 15950 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 14650 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 12250 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 11350 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 11150 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 9950 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 9450 Available
Salvia rosmarinusNepetoideae · Salvia Stable locus 9050 Available
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 8350 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 8250 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 8150 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 7750 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 7650 Available
Ajuga decumbensAjugoideae · Ajuga Stable locus 7550 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 7450 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 7250 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 6850 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 6850 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 6750 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 6550 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 6550 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 6450 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 6350 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 6050 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 5950 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 5950 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 5750 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 5750 No matrix
Isodon serraNepetoideae · Isodon Stable locus 5750 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 5650 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 5650 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 5550 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 5550 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 5550 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 5550 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 5450 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 5450 No matrix
Lamium albumLamioideae · Lamium Stable locus 5350 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 5350 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 5250 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 5150 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 5150 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 5150 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 5150 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 5050 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 5050 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 4848 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 4848 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 4848 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 4848 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 4848 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 4747 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 4747 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 4747 Available
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 4646 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 4646 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 4545 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 4444 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 4444 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 4444 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 4444 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 4444 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 4242 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 4242 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 4242 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 4242 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 4242 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 4141 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 4141 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 4040 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 4040 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 4040 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 4040 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 3939 Available
Salvia officinalisNepetoideae · Salvia Stable locus 3838 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 3737 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
ORMA_c48947_g1_i1_len_1359
Origanum majoranaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 69.3%154.0
380102.g6.t1
Ocimum basilicumSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.4%153.9
559.g46.t1
Ocimum basilicumSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.4%153.8
COTO_c41476_g2_i1_len_1322
Congea tomentosaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 72.3%153.5
MODI_c38552_g1_i1_len_1260
Monarda didymaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 70.8%153.4
THVU_c63121_g1_i3_len_1270
Thymus vulgarisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 68.8%153.4
MEOF_c1607_g1_i1_len_1274
Melissa officinalisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.1%152.8
Sbai3C184T18.1
Scutellaria baicalensisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.5%152.7
Sbai3C186T3.1
Scutellaria baicalensisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.5%152.7
Sbow08G0017740.1
Salvia bowleyanaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 72.6%152.6
MODI_c33119_g1_i1_len_1394
Monarda didymaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.5%152.4
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_16.1137.mRNA1
Stenogyne calaminthoidesSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 68.1%152.3
GWHPBJVA003510
Thymus quinquecostatusSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 68.5%152.2
CAame02G0022420.v1.94
Callicarpa americanaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 70.2%152.1
PHFR_c62683_g1_i1_len_1451
Phlomis fruticosaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 68.6%151.9
KAL8481719.1
Phlomoides rotataSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 69.6%151.6
STOF_c50619_g1_i1_len_1432
Stachys officinalisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 70.8%151.5
origanum_vulgare_738.g8.t1
Origanum vulgareSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 68.9%151.5
Es3A.G234200.t1
Elsholtzia splendensSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 70.8%151.4
evm.model.LG06.1393
Clinopodium barosmumSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.9%151.4
rna-gnl|WGS:QFCC|chr05_34103803_34107741.mrna1
Perilla frutescensSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.4%151.4
rna-gnl|WGS:QIYW|chr02_32873889_32877827.mrna1
Perilla citriodoraSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.4%151.4
rna-gnl|WGS:QIYW|chr02_32873889_32877827.mrna1
Perilla frutescens var. hirtellaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.4%151.4
HYSU_c21275_g1_i1_len_1355
Hyptis suaveolensSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 70.4%151.3
Ms_c006g00909.1
Mosla soochowensisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 70.5%151.3
XP_047980395.1
Salvia hispanicaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.7%151.3
PLBA_c23836_g1_i3_len_1632
Plectranthus barbatusSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 67.5%151.2
PRMI_c114037_g1_i1_len_1412
Premna microphyllaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 70.4%151.0
Mc5g28190.1
Mosla chinensisSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 69.8%150.9
GlLon_008140-T1
Glechoma longitubaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 68.6%150.8
evm.model.LG01.896
Clinopodium barosmumSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 72.6%150.7
g13496.t1
Salvia sclareaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.8%150.5
5:ILLG10G76.42m1
Isodon lophanthoidesSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.0%150.0
evm.model.LG10.996
Clinopodium barosmumSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 69.5%150.0
evm.model.ptg000005l.1050
Isodon serraSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.0%150.0
Smil04G0029140.1.v1.484
Salvia miltiorrhizaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 68.5%149.9
AG34_scaffold2_35030T
Agastache rugosaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 69.2%149.5
AGFO_c30258_g1_i1_len_1432
Agastache foeniculumSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 69.2%149.5
CAame02G0022430.v1.94
Callicarpa americanaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 70.3%149.5
Pat_B29G082500.m1
Pogostemon cablinSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 69.9%149.2
Dru_4G0009160.1
Dracocephalum rupestreSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 68.9%149.1
MESP_c33142_g1_i1_len_1372
Mentha spicataSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 69.5%149.1
GLHE_c59166_g1_i1_len_1405
Glechoma hederaceaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 70.4%149.0
XP_042006967.1
Salvia splendensSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 70.6%149.0
AJRE_c38099_g1_i1_len_1301
Ajuga reptansSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 70.8%148.9
Sbow07G0001920.1
Salvia bowleyanaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 68.5%148.9
Es4B.G155800.t2
Elsholtzia splendensSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 67.7%148.7
KAL8481720.1
Phlomoides rotataSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 69.5%148.5
LAAN_c55233_g1_i2_len_1418
Lavandula angustifoliaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 72.8%148.5
PEAT_c38837_g3_i1_len_1770
Perovskia atriplicifoliaSteroid / sterol · SMT1_SMT2_SMT3blast+hmm High 71.4%148.0