LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

SQE

SQE enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeSteroid and sterol biosynthesis
Public candidate IDs
461
Species with candidates
80
Species with assignments
80
Source assignments
461
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers461 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
461
Public candidate count
461
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 3030 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 2222 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 1212 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 1111 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1111 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 1111 Available
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1010 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 1010 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 99 Available
Perilla frutescensNepetoideae · Perilla Stable locus 99 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 99 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 88 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 88 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 88 Available
Salvia splendensNepetoideae · Salvia Stable locus 88 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 88 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 88 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 77 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 77 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 77 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 77 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 77 Available
Ajuga decumbensAjugoideae · Ajuga Stable locus 66 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 66 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 66 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 66 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 66 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 66 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 66 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 55 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 55 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 55 No matrix
Lamium albumLamioideae · Lamium Stable locus 55 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 55 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 55 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 55 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 55 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 55 Available
Perilla citriodoraNepetoideae · Perilla Stable locus 55 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 55 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 55 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 55 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 55 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 55 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 44 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 44 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 44 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 44 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 44 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 44 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 44 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 44 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 44 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 44 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 44 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 44 Available
Salvia officinalisNepetoideae · Salvia Stable locus 44 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 44 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 44 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 33 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 33 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 33 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 33 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 33 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 33 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 33 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 33 No matrix
Isodon serraNepetoideae · Isodon Stable locus 33 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 33 Available
Mentha x piperitaNepetoideae · Mentha Stable locus 33 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 33 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 33 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 33 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 33 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 33 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 22 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 22 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 22 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 22 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Pat_A09G107400.m1
Pogostemon cablinSteroid / sterol · SQEblast+hmm High 80.8%48.4
Pat_A10G100100.m1
Pogostemon cablinSteroid / sterol · SQEblast+hmm High 81.3%48.4
LELE_c28675_g1_i1_len_2005
Leonotis leonurusSteroid / sterol · SQEblast+hmm High 84.6%48.3
ORMA_c47965_g1_i3_len_1451
Origanum majoranaSteroid / sterol · SQEblast+hmm High 73.0%48.3
g23799.t1.1.5b2d4a28
Nepeta catariaSteroid / sterol · SQEblast+hmm High 69.5%48.1
MEOF_c10742_g1_i2_len_2156
Melissa officinalisSteroid / sterol · SQEblast+hmm High 82.2%48.0
Mlonscaffold_6_length_375374740145800.1.v1.326
Mentha longifoliaSteroid / sterol · SQEblast+hmm High 78.9%48.0
DRSE_g9491.t1
Drepanocaryum sewerzowiiSteroid / sterol · SQEblast+hmm High 69.4%47.9
MACO_g8886.t1
Marmoritis complanataSteroid / sterol · SQEblast+hmm High 69.6%47.9
MEPI_c58582_g1_i1_len_2065
Mentha x piperitaSteroid / sterol · SQEblast+hmm High 79.0%47.9
g23799.t1
Nepeta catariaSteroid / sterol · SQEblast+hmm High 69.6%47.9
evm.model.Chr02.61
Callicarpa nudifloraSteroid / sterol · SQEblast+hmm High 70.8%47.8
g5114.t1
Nepeta mussiniiSteroid / sterol · SQEblast+hmm High 69.4%47.8
g5114.t1.1.5b2c7c78
Nepeta mussiniiSteroid / sterol · SQEblast+hmm High 68.9%47.8
PRLA_c69380_g1_i1_len_2095
Prostanthera lasianthosSteroid / sterol · SQEblast+hmm High 79.3%47.6
Pat_B02G211600.m1
Pogostemon cablinSteroid / sterol · SQEblast+hmm High 73.8%47.6
evm.model.chr11.660
Prunella vulgarisSteroid / sterol · SQEblast+hmm High 67.6%47.6
evm.model.chr9.610
Prunella vulgarisSteroid / sterol · SQEblast+hmm High 69.2%47.6
Pat_A01G245800.m1
Pogostemon cablinSteroid / sterol · SQEblast+hmm High 72.8%47.4
Pat_A02G243300.m1
Pogostemon cablinSteroid / sterol · SQEblast+hmm High 73.8%47.4
Pat_B01G217600.m1
Pogostemon cablinSteroid / sterol · SQEblast+hmm High 73.3%47.4
AJRE_c45698_g1_i6_len_2215
Ajuga reptansSteroid / sterol · SQEblast+hmm High 80.9%47.3
CAame06G0007100.v1.94
Callicarpa americanaSteroid / sterol · SQEblast+hmm High 81.8%47.2
CAame06G0007110.v1.94
Callicarpa americanaSteroid / sterol · SQEblast+hmm High 80.8%47.2
tectona_grandis_Tg12g16540.t1
Tectona grandisSteroid / sterol · SQEblast+hmm High 69.8%47.2
Pat_A01G140000.m1
Pogostemon cablinSteroid / sterol · SQEblast+hmm High 75.9%47.1
Teucrium_chamaedrys__Tcha13434
Teucrium chamaedrysSteroid / sterol · SQEblast+hmm High 82.6%46.8
Smil02G0011860.1.v1.484
Salvia miltiorrhizaSteroid / sterol · SQEblast+hmm High 68.2%46.6
KAL1541167.1
Salvia divinorumSteroid / sterol · SQEblast+hmm High 69.2%46.5
Roff24190318010
Salvia rosmarinusSteroid / sterol · SQEblast+hmm High 70.1%46.5
evm.model.Chr06.91
Callicarpa nudifloraSteroid / sterol · SQEblast+hmm High 60.3%46.3
GMPH_c4964_g1_i1_len_2002
Gmelina philippensisSteroid / sterol · SQEblast+hmm High 82.2%45.7
Pat_B01G118900.m1
Pogostemon cablinSteroid / sterol · SQEblast+hmm High 75.3%45.5
STOF_c65596_g1_i1_len_2071
Stachys officinalisSteroid / sterol · SQEblast+hmm High 78.8%44.6
tectona_grandis_Tg12g11250.t1
Tectona grandisSteroid / sterol · SQEblast+hmm High 79.7%44.3
Sbow02G0054010.1
Salvia bowleyanaSteroid / sterol · SQEblast+hmm High 64.8%44.1
378165.g3.t1_378165.g4.t1
Ocimum basilicumSteroid / sterol · SQEblast+hmm High 79.7%43.9
LECA_c26327_g1_i1_len_2045
Leonurus cardiacaSteroid / sterol · SQEblast+hmm High 77.9%43.4
Lj7g02260.1
Leonurus japonicusSteroid / sterol · SQEblast+hmm High 78.2%43.3
Ls5g33810.1
Leonurus sibiricusSteroid / sterol · SQEblast+hmm High 78.6%43.3
AJRE_c52123_g1_i1_len_315
Ajuga reptansSteroid / sterol · SQEblast+hmm High 78.6%41.8
scutellaria_barbata_GWHPAOTP003947
Scutellaria barbataSteroid / sterol · SQEblast+hmm High 64.8%41.8
Ls5g28020.1
Leonurus sibiricusSteroid / sterol · SQEblast+hmm High 64.2%41.4
385214.g10.t1
Ocimum basilicumSteroid / sterol · SQEblast+hmm High 83.7%41.0
STOF_c137255_g1_i1_len_590
Stachys officinalisSteroid / sterol · SQEblast+hmm High 71.8%41.0
KAL8553466.1
Phlomoides rotataSteroid / sterol · SQEblast+hmm High 76.9%40.7
SAOF_c21629_g1_i2_len_1196
Salvia officinalisSteroid / sterol · SQEblast+hmm High 84.9%40.7
KAL8553463.1
Phlomoides rotataSteroid / sterol · SQEblast+hmm High 84.7%40.3
KAL8553464.1
Phlomoides rotataSteroid / sterol · SQEblast+hmm High 78.8%40.2
KAL8554817.1
Phlomoides rotataSteroid / sterol · SQEblast+hmm High 73.6%40.2