LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

SQE

SQE enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeSteroid and sterol biosynthesis
Public candidate IDs
461
Species with candidates
80
Species with assignments
80
Source assignments
461
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers461 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
461
Public candidate count
461
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 3030 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 2222 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 1212 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 1111 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1111 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 1111 Available
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1010 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 1010 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 99 Available
Perilla frutescensNepetoideae · Perilla Stable locus 99 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 99 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 88 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 88 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 88 Available
Salvia splendensNepetoideae · Salvia Stable locus 88 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 88 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 88 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 77 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 77 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 77 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 77 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 77 Available
Ajuga decumbensAjugoideae · Ajuga Stable locus 66 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 66 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 66 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 66 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 66 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 66 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 66 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 55 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 55 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 55 No matrix
Lamium albumLamioideae · Lamium Stable locus 55 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 55 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 55 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 55 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 55 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 55 Available
Perilla citriodoraNepetoideae · Perilla Stable locus 55 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 55 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 55 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 55 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 55 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 55 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 44 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 44 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 44 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 44 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 44 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 44 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 44 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 44 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 44 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 44 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 44 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 44 Available
Salvia officinalisNepetoideae · Salvia Stable locus 44 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 44 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 44 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 33 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 33 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 33 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 33 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 33 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 33 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 33 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 33 No matrix
Isodon serraNepetoideae · Isodon Stable locus 33 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 33 Available
Mentha x piperitaNepetoideae · Mentha Stable locus 33 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 33 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 33 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 33 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 33 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 33 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 22 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 22 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 22 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 22 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
LAAL_c58251_g1_i1_len_329
Lamium albumSteroid / sterol · SQEblast+hmm Medium 64.9%14.3
scutellaria_barbata_GWHPAOTP024223
Scutellaria barbataSteroid / sterol · SQEblast+hmm Medium 32.6%14.3
Ls5g28000.1
Leonurus sibiricusSteroid / sterol · SQEblast+hmm Medium 53.8%13.9
tectona_grandis_Tg12g12240.t1
Tectona grandisSteroid / sterol · SQEblast+hmm Medium 66.4%12.6
scutellaria_barbata_GWHPAOTP024228
Scutellaria barbataSteroid / sterol · SQEblast+hmm Medium 65.1%12.5
g10730.t1
Hyssopus officinalisSteroid / sterol · SQEblast+hmm Medium 42.4%9.5
LELE_c13390_g1_i1_len_901
Leonotis leonurusSteroid / sterol · SQEblast+hmm Medium 47.9%9.0
384473.g21.t1
Ocimum basilicumSteroid / sterol · SQEblast Medium 74.5%—
CAame04G0002100.v1.94
Callicarpa americanaSteroid / sterol · SQEblast Medium 75.9%—
CAame04G0002120.v1.94
Callicarpa americanaSteroid / sterol · SQEblast Medium 53.0%—
CAame04G0002130.v1.94
Callicarpa americanaSteroid / sterol · SQEblast Medium 53.0%—
CAame10G0006330.v1.94
Callicarpa americanaSteroid / sterol · SQEblast Medium 90.0%—
COPY_c11346_g1_i1_len_489
Cornutia pyramidataSteroid / sterol · SQEblast Medium 41.9%—
COPY_c116407_g1_i1_len_466
Cornutia pyramidataSteroid / sterol · SQEblast Medium 55.9%—
COPY_c2289_g1_i1_len_387
Cornutia pyramidataSteroid / sterol · SQEblast Medium 44.4%—
COTO_c77340_g1_i1_len_427
Congea tomentosaSteroid / sterol · SQEblast Medium 71.8%—
GMPH_c42234_g1_i1_len_349
Gmelina philippensisSteroid / sterol · SQEblast Medium 86.3%—
HOSA_c73836_g1_i1_len_275
Holmskioldia sanguineaSteroid / sterol · SQEblast Medium 60.9%—
HOSA_c94916_g1_i1_len_307
Holmskioldia sanguineaSteroid / sterol · SQEblast Medium 83.3%—
HYSU_c59230_g1_i1_len_270
Hyptis suaveolensSteroid / sterol · SQEblast Medium 85.4%—
KAL1544342.1
Salvia divinorumSteroid / sterol · SQEblast Medium 67.6%—
KAL1544343.1
Salvia divinorumSteroid / sterol · SQEblast Medium 65.0%—
LAAL_c3337_g1_i1_len_358
Lamium albumSteroid / sterol · SQEblast Medium 44.5%—
LAAN_c44131_g1_i1_len_435
Lavandula angustifoliaSteroid / sterol · SQEblast Medium 58.7%—
LECA_c60387_g1_i1_len_339
Leonurus cardiacaSteroid / sterol · SQEblast Medium 73.0%—
LELE_c79963_g1_i1_len_256
Leonotis leonurusSteroid / sterol · SQEblast Medium 65.5%—
LYAM_c86127_g1_i1_len_254
Lycopus americanusSteroid / sterol · SQEblast Medium 67.9%—
MAVU_c15586_g1_i2_len_1297
Marrubium vulgareSteroid / sterol · SQEblast Medium 59.6%—
MAVU_c4529_g1_i1_len_320
Marrubium vulgareSteroid / sterol · SQEblast Medium 69.8%—
MODI_c35633_g1_i1_len_1460
Monarda didymaSteroid / sterol · SQEblast Medium 30.1%—
PEAT_c19849_g1_i1_len_808
Perovskia atriplicifoliaSteroid / sterol · SQEblast Medium 68.3%—
PEBA_c8054_g1_i1_len_408
Petraeovitex bambusetoriumSteroid / sterol · SQEblast Medium 61.2%—
PRLA_c103440_g1_i1_len_303
Prostanthera lasianthosSteroid / sterol · SQEblast Medium 77.2%—
PRLA_c116114_g1_i1_len_508
Prostanthera lasianthosSteroid / sterol · SQEblast Medium 45.7%—
PRMI_c129804_g1_i1_len_286
Premna microphyllaSteroid / sterol · SQEblast Medium 74.7%—
Pat_A05G102000.m1
Pogostemon cablinSteroid / sterol · SQEblast Medium 43.1%—
Pat_A06G099700.m1
Pogostemon cablinSteroid / sterol · SQEblast Medium 50.6%—
Pat_B01G118800.m1
Pogostemon cablinSteroid / sterol · SQEblast Medium 62.6%—
Pat_B06G096700.m1
Pogostemon cablinSteroid / sterol · SQEblast Medium 65.4%—
STOF_c112104_g1_i1_len_281
Stachys officinalisSteroid / sterol · SQEblast Medium 60.6%—
STOF_c65596_g2_i1_len_436
Stachys officinalisSteroid / sterol · SQEblast Medium 82.8%—
STOF_c70221_g1_i1_len_627
Stachys officinalisSteroid / sterol · SQEblast Medium 64.3%—
STOF_c92216_g1_i1_len_331
Stachys officinalisSteroid / sterol · SQEblast Medium 72.9%—
Sbai1A600T137.1
Scutellaria baicalensisSteroid / sterol · SQEblast Medium 69.7%—
Sbai6A102T60.1
Scutellaria baicalensisSteroid / sterol · SQEblast Medium 84.7%—
Sbai8A2T117.1
Scutellaria baicalensisSteroid / sterol · SQEblast Medium 63.5%—
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_277.10.mRNA1
Stenogyne calaminthoidesSteroid / sterol · SQEblast Medium 67.5%—
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_277.11.mRNA1
Stenogyne calaminthoidesSteroid / sterol · SQEblast Medium 45.8%—
Teucrium_chamaedrys__Tcha37717
Teucrium chamaedrysSteroid / sterol · SQEblast Medium 40.0%—
VIAG_c71656_g1_i1_len_328
Vitex agnus-castusSteroid / sterol · SQEblast Medium 86.1%—