LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

SQS_FDFT1

Squalene synthase / FDFT1 family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeSteroid and sterol biosynthesis
Public candidate IDs
630
Species with candidates
80
Species with assignments
80
Source assignments
630
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers630 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
630
Public candidate count
630
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 2929 Available
Salvia splendensNepetoideae · Salvia Stable locus 2525 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 2222 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 2222 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 2121 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 2020 Available
Teucrium marumAjugoideae · Teucrium Stable locus 1515 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 1414 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 1212 Available
Salvia hispanicaNepetoideae · Salvia Stable locus 1212 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1212 Available
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1111 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1111 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1111 Available
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 1010 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1010 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1010 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 99 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 99 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 99 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 88 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 88 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 88 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 88 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 88 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 88 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 77 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 77 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 77 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 77 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 77 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 77 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 77 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 77 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 66 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 66 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 66 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 66 No matrix
Lamium albumLamioideae · Lamium Stable locus 66 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 66 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 66 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 66 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 66 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 66 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 66 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 66 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 66 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 66 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 55 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 55 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 55 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 55 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 55 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 55 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 55 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 55 No matrix
Isodon serraNepetoideae · Isodon Stable locus 55 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 55 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 55 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 55 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 55 Available
Mentha spicataNepetoideae · Mentha Stable locus 55 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 55 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 55 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 55 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 55 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 55 Available
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 55 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 55 Available
Vitex agnus-castusViticoideae · Vitex Stable locus 55 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 44 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 44 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 44 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 44 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 44 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 44 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 44 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 44 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 33 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 33 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
LELE_c54055_g1_i1_len_1790
Leonotis leonurusSteroid / sterol · SQS_FDFT1blast+hmm High 81.2%140.4
g11958.t1
Salvia sclareaSteroid / sterol · SQS_FDFT1blast+hmm High 80.4%140.4
rna-gnl|WGS:QFCC|chr12_32101566_32107945.mrna1
Perilla frutescensSteroid / sterol · SQS_FDFT1blast+hmm High 82.9%140.4
rna-gnl|WGS:QIYW|chr08_31340349_31346719.mrna1
Perilla citriodoraSteroid / sterol · SQS_FDFT1blast+hmm High 82.9%140.4
rna-gnl|WGS:QIYW|chr08_31340349_31346719.mrna1
Perilla frutescens var. hirtellaSteroid / sterol · SQS_FDFT1blast+hmm High 82.9%140.4
STOF_c44691_g1_i1_len_1726
Stachys officinalisSteroid / sterol · SQS_FDFT1blast+hmm High 81.2%140.3
COCA_c72416_g1_i4_len_1701
Collinsonia canadensisSteroid / sterol · SQS_FDFT1blast+hmm High 83.3%140.1
PEBA_c40226_g1_i3_len_2931
Petraeovitex bambusetoriumSteroid / sterol · SQS_FDFT1blast+hmm High 82.4%140.0
LAAN_c56268_g1_i3_len_1768
Lavandula angustifoliaSteroid / sterol · SQS_FDFT1blast+hmm High 82.0%139.8
Ms_c009g02603.1
Mosla soochowensisSteroid / sterol · SQS_FDFT1blast+hmm High 83.1%139.8
WEFR_c44765_g1_i1_len_1692
Westringia fruticosaSteroid / sterol · SQS_FDFT1blast+hmm High 84.4%139.8
AJRE_c37256_g1_i1_len_1861
Ajuga reptansSteroid / sterol · SQS_FDFT1blast+hmm High 83.8%139.6
Es1B.G065100.t1
Elsholtzia splendensSteroid / sterol · SQS_FDFT1blast+hmm High 81.2%139.6
Clgra_015212-T1
Clinopodium gracileSteroid / sterol · SQS_FDFT1blast+hmm High 82.7%139.5
GWHPBJVA006416
Thymus quinquecostatusSteroid / sterol · SQS_FDFT1blast+hmm High 82.0%139.5
MACO_g548.t1
Marmoritis complanataSteroid / sterol · SQS_FDFT1blast+hmm High 81.9%139.5
Mlonscaffold_6_length_375374740144680.1.v1.326
Mentha longifoliaSteroid / sterol · SQS_FDFT1blast+hmm High 83.4%139.5
Smil00G0041560.1.v1.484
Salvia miltiorrhizaSteroid / sterol · SQS_FDFT1blast+hmm High 83.5%139.5
g17565.t1
Ajuga decumbensSteroid / sterol · SQS_FDFT1blast+hmm High 83.7%139.5
KAL1565824.1
Salvia divinorumSteroid / sterol · SQS_FDFT1blast+hmm High 81.0%139.3
Smil02G0011280.1.v1.484
Salvia miltiorrhizaSteroid / sterol · SQS_FDFT1blast+hmm High 82.2%139.3
VIAG_c45194_g2_i1_len_1852
Vitex agnus-castusSteroid / sterol · SQS_FDFT1blast+hmm High 82.9%139.3
Ls7g21670.1
Leonurus sibiricusSteroid / sterol · SQS_FDFT1blast+hmm High 80.9%139.2
PLBA_c12381_g1_i1_len_919
Plectranthus barbatusSteroid / sterol · SQS_FDFT1blast+hmm High 81.9%139.2
Sbow06G0035350.1
Salvia bowleyanaSteroid / sterol · SQS_FDFT1blast+hmm High 81.7%139.2
Pat_A02G105700.m1
Pogostemon cablinSteroid / sterol · SQS_FDFT1blast+hmm High 82.6%139.1
Pat_A02G105700.m2
Pogostemon cablinSteroid / sterol · SQS_FDFT1blast+hmm High 82.6%139.1
Pat_B02G079200.m1
Pogostemon cablinSteroid / sterol · SQS_FDFT1blast+hmm High 82.4%139.1
Pat_B02G079200.m2
Pogostemon cablinSteroid / sterol · SQS_FDFT1blast+hmm High 82.4%139.1
TECA_c32503_g1_i2_len_1897
Teucrium canadenseSteroid / sterol · SQS_FDFT1blast+hmm High 83.1%139.1
THVU_c62586_g1_i1_len_1132
Thymus vulgarisSteroid / sterol · SQS_FDFT1blast+hmm High 76.5%139.1
MESP_c42787_g2_i1_len_2003
Mentha spicataSteroid / sterol · SQS_FDFT1blast+hmm High 83.7%139.0
Sbow02G0008910.1
Salvia bowleyanaSteroid / sterol · SQS_FDFT1blast+hmm High 78.7%139.0
evm.model.LG02.2038
Clinopodium barosmumSteroid / sterol · SQS_FDFT1blast+hmm High 82.9%139.0
evm.model.chr2.431
Prunella vulgarisSteroid / sterol · SQS_FDFT1blast+hmm High 80.8%139.0
7:ILLG7G30.111m1
Isodon lophanthoidesSteroid / sterol · SQS_FDFT1blast+hmm High 83.9%138.9
evm.model.chr11.627
Prunella vulgarisSteroid / sterol · SQS_FDFT1blast+hmm High 81.2%138.9
Es1A.G064900.t1
Elsholtzia splendensSteroid / sterol · SQS_FDFT1blast+hmm High 80.9%138.8
Mc4g27830.1
Mosla chinensisSteroid / sterol · SQS_FDFT1blast+hmm High 82.9%138.8
evm.model.ptg000017l.1998
Isodon serraSteroid / sterol · SQS_FDFT1blast+hmm High 83.3%138.8
g6196.t1
Nepeta catariaSteroid / sterol · SQS_FDFT1blast+hmm High 80.7%138.8
LAAL_c26800_g1_i1_len_1836
Lamium albumSteroid / sterol · SQS_FDFT1blast+hmm High 80.7%138.7
LECA_c23425_g1_i2_len_1909
Leonurus cardiacaSteroid / sterol · SQS_FDFT1blast+hmm High 79.6%138.6
MEPI_c60415_g1_i5_len_1910
Mentha x piperitaSteroid / sterol · SQS_FDFT1blast+hmm High 82.2%138.5
Lj7g00680.1
Leonurus japonicusSteroid / sterol · SQS_FDFT1blast+hmm High 80.9%138.4
Roff21440284000
Salvia rosmarinusSteroid / sterol · SQS_FDFT1blast+hmm High 83.2%138.4
Dru_1G0017410.1
Dracocephalum rupestreSteroid / sterol · SQS_FDFT1blast+hmm High 80.7%138.2
g13526.t1
Nepeta mussiniiSteroid / sterol · SQS_FDFT1blast+hmm High 81.4%138.2
g13526.t1.1.5b2c7c7f
Nepeta mussiniiSteroid / sterol · SQS_FDFT1blast+hmm High 81.4%138.2
g4264.t1
Nepeta catariaSteroid / sterol · SQS_FDFT1blast+hmm High 81.2%138.2