LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

SQS_FDFT1

Squalene synthase / FDFT1 family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeSteroid and sterol biosynthesis
Public candidate IDs
630
Species with candidates
80
Species with assignments
80
Source assignments
630
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers630 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
630
Public candidate count
630
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 2929 Available
Salvia splendensNepetoideae · Salvia Stable locus 2525 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 2222 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 2222 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 2121 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 2020 Available
Teucrium marumAjugoideae · Teucrium Stable locus 1515 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 1414 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 1212 Available
Salvia hispanicaNepetoideae · Salvia Stable locus 1212 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1212 Available
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1111 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1111 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1111 Available
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 1010 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1010 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1010 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 99 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 99 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 99 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 88 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 88 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 88 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 88 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 88 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 88 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 77 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 77 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 77 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 77 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 77 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 77 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 77 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 77 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 66 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 66 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 66 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 66 No matrix
Lamium albumLamioideae · Lamium Stable locus 66 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 66 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 66 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 66 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 66 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 66 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 66 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 66 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 66 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 66 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 55 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 55 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 55 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 55 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 55 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 55 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 55 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 55 No matrix
Isodon serraNepetoideae · Isodon Stable locus 55 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 55 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 55 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 55 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 55 Available
Mentha spicataNepetoideae · Mentha Stable locus 55 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 55 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 55 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 55 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 55 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 55 Available
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 55 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 55 Available
Vitex agnus-castusViticoideae · Vitex Stable locus 55 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 44 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 44 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 44 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 44 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 44 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 44 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 44 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 44 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 33 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 33 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
SAOF_c36604_g1_i1_len_1853
Salvia officinalisSteroid / sterol · SQS_FDFT1blast+hmm High 74.3%59.9
HOSA_c35941_g1_i1_len_2089
Holmskioldia sanguineaSteroid / sterol · SQS_FDFT1blast+hmm High 65.8%59.8
CAame01G0048880.v1.94
Callicarpa americanaSteroid / sterol · SQS_FDFT1blast+hmm High 75.4%59.6
CAame01G0048910.v1.94
Callicarpa americanaSteroid / sterol · SQS_FDFT1blast+hmm High 75.4%59.6
CAame01G0048920.v1.94
Callicarpa americanaSteroid / sterol · SQS_FDFT1blast+hmm High 75.4%59.6
CAame01G0048930.v1.94
Callicarpa americanaSteroid / sterol · SQS_FDFT1blast+hmm High 75.4%59.6
evm.model.Chr01.597
Callicarpa nudifloraSteroid / sterol · SQS_FDFT1blast+hmm High 76.4%59.6
g17981.t1
Ajuga decumbensSteroid / sterol · SQS_FDFT1blast+hmm High 74.5%59.6
18:ILLG2G48.58m1
Isodon lophanthoidesSteroid / sterol · SQS_FDFT1blast+hmm High 66.4%59.4
GMPH_c13286_g1_i2_len_2201
Gmelina philippensisSteroid / sterol · SQS_FDFT1blast+hmm High 73.6%59.4
evm.model.ptg000016l.800
Isodon serraSteroid / sterol · SQS_FDFT1blast+hmm High 66.4%59.4
COPY_c79900_g1_i1_len_1991
Cornutia pyramidataSteroid / sterol · SQS_FDFT1blast+hmm High 74.6%59.3
PRLA_c64243_g1_i1_len_2179
Prostanthera lasianthosSteroid / sterol · SQS_FDFT1blast+hmm High 73.7%59.2
PRMI_c35101_g2_i3_len_2081
Premna microphyllaSteroid / sterol · SQS_FDFT1blast+hmm High 75.9%59.2
STOF_c1873_g1_i1_len_1862
Stachys officinalisSteroid / sterol · SQS_FDFT1blast+hmm High 73.1%59.2
ocimum_sanctum_Ote100059670041
Ocimum tenuiflorumSteroid / sterol · SQS_FDFT1blast+hmm High 74.3%59.2
HYSU_c29527_g2_i1_len_2157
Hyptis suaveolensSteroid / sterol · SQS_FDFT1blast+hmm High 75.6%59.1
453.g135.t1
Ocimum basilicumSteroid / sterol · SQS_FDFT1blast+hmm High 74.2%58.7
Pat_A25G004700.m1
Pogostemon cablinSteroid / sterol · SQS_FDFT1blast+hmm High 64.6%58.6
Pat_B25G004900.m1
Pogostemon cablinSteroid / sterol · SQS_FDFT1blast+hmm High 64.3%58.6
XP_042017901.1
Salvia splendensSteroid / sterol · SQS_FDFT1blast+hmm High 74.4%58.6
XP_042040456.1
Salvia splendensSteroid / sterol · SQS_FDFT1blast+hmm High 74.9%58.6
XP_042040457.1
Salvia splendensSteroid / sterol · SQS_FDFT1blast+hmm High 74.9%58.6
XP_042040458.1
Salvia splendensSteroid / sterol · SQS_FDFT1blast+hmm High 74.9%58.6
XP_042052054.1
Salvia splendensSteroid / sterol · SQS_FDFT1blast+hmm High 74.3%58.6
XP_042068353.1
Salvia splendensSteroid / sterol · SQS_FDFT1blast+hmm High 73.7%58.6
XP_047956295.1
Salvia hispanicaSteroid / sterol · SQS_FDFT1blast+hmm High 74.4%58.6
KAL1540721.1
Salvia divinorumSteroid / sterol · SQS_FDFT1blast+hmm High 75.1%58.5
LAAN_c54697_g1_i3_len_1886
Lavandula angustifoliaSteroid / sterol · SQS_FDFT1blast+hmm High 75.4%58.5
550.g92.t1
Ocimum basilicumSteroid / sterol · SQS_FDFT1blast+hmm High 75.3%58.4
BAPS_c45986_g1_i1_len_1871
Ballota pseudodictamnusSteroid / sterol · SQS_FDFT1blast+hmm High 72.2%58.4
LAAL_c33962_g3_i1_len_2290
Lamium albumSteroid / sterol · SQS_FDFT1blast+hmm High 65.4%58.4
LECA_c22749_g1_i3_len_2282
Leonurus cardiacaSteroid / sterol · SQS_FDFT1blast+hmm High 66.1%58.4
LELE_c24029_g2_i1_len_2049
Leonotis leonurusSteroid / sterol · SQS_FDFT1blast+hmm High 72.2%58.4
Lj6g25640.1
Leonurus japonicusSteroid / sterol · SQS_FDFT1blast+hmm High 65.6%58.4
Ls1g35380.1
Leonurus sibiricusSteroid / sterol · SQS_FDFT1blast+hmm High 65.5%58.4
MAVU_c68275_g1_i1_len_1905
Marrubium vulgareSteroid / sterol · SQS_FDFT1blast+hmm High 72.2%58.4
LAAN_c14977_g1_i1_len_423
Lavandula angustifoliaSteroid / sterol · SQS_FDFT1blast+hmm High 88.9%58.3
AJRE_c34899_g1_i1_len_2096
Ajuga reptansSteroid / sterol · SQS_FDFT1blast+hmm High 73.6%58.2
XP_047971564.1
Salvia hispanicaSteroid / sterol · SQS_FDFT1blast+hmm High 74.6%58.2
XP_047971565.1
Salvia hispanicaSteroid / sterol · SQS_FDFT1blast+hmm High 74.6%58.2
CLBU_c50342_g1_i1_len_2019
Clerodendrum bungeiSteroid / sterol · SQS_FDFT1blast+hmm High 73.2%58.1
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_16.90.mRNA1
Stenogyne calaminthoidesSteroid / sterol · SQS_FDFT1blast+hmm High 71.9%58.1
XP_047971566.1
Salvia hispanicaSteroid / sterol · SQS_FDFT1blast+hmm High 74.6%58.1
Sbai2C370T2.1
Scutellaria baicalensisSteroid / sterol · SQS_FDFT1blast+hmm High 66.0%58.0
Roff13680171670
Salvia rosmarinusSteroid / sterol · SQS_FDFT1blast+hmm High 74.0%57.9
Roff13680171680
Salvia rosmarinusSteroid / sterol · SQS_FDFT1blast+hmm High 74.0%57.9
scutellaria_barbata_GWHPAOTP001189
Scutellaria barbataSteroid / sterol · SQS_FDFT1blast+hmm High 75.3%57.9
383685.g84.t1
Ocimum basilicumSteroid / sterol · SQS_FDFT1blast+hmm High 75.6%57.8
KAL8550073.1
Phlomoides rotataSteroid / sterol · SQS_FDFT1blast+hmm High 66.3%57.8