LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

DXR

1-deoxy-D-xylulose 5-phosphate reductoisomerase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
140
Species with candidates
80
Species with assignments
80
Source assignments
140
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers140 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
140
Public candidate count
140
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Phlomoides rotataLamioideae · Phlomoides Stable locus 88 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 77 Available
Pogostemon cablinLamioideae · Pogostemon Stable locus 55 Available
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 44 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 44 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 44 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 33 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 33 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 33 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 33 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 33 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 22 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 22 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 22 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 22 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 22 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 22 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 22 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 22 Available
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 22 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 22 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 22 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 22 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 22 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 22 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 22 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 22 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 22 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 22 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 22 Available
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 22 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 22 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 22 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 22 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 22 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 11 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 11 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 11 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 11 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 11 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 11 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 11 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 11 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 11 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 11 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 11 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 11 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 11 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 11 No matrix
Isodon serraNepetoideae · Isodon Stable locus 11 No matrix
Lamium albumLamioideae · Lamium Stable locus 11 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 11 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 11 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 11 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 11 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 11 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 11 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 11 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 11 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 11 Available
Mentha spicataNepetoideae · Mentha Stable locus 11 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 11 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 11 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 11 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 11 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 11 Available
Origanum majoranaNepetoideae · Origanum Stable locus 11 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 11 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 11 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 11 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 11 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 11 Available
Salvia officinalisNepetoideae · Salvia Stable locus 11 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 11 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 11 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 11 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 11 Available
Thymus quinquecostatusNepetoideae · Thymus Stable locus 11 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 11 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
AG34_scaffold5_18960T
Agastache rugosaTerpenoid · DXRblast+hmm High 82.7%129.7
KAL8457786.1
Phlomoides rotataTerpenoid · DXRblast+hmm High 86.8%129.6
KAL8457787.1
Phlomoides rotataTerpenoid · DXRblast+hmm High 86.8%129.6
TECA_c61814_g1_i1_len_563
Teucrium canadenseTerpenoid · DXRblast+hmm High 93.6%100.8
HOSA_c46708_g1_i1_len_1925
Holmskioldia sanguineaTerpenoid · DXRblast+hmm High 87.0%78.3
LAAN_c54956_g2_i1_len_279
Lavandula angustifoliaTerpenoid · DXRblast+hmm High 97.8%61.7
rna-gnl|WGS:QIYW|chr10_48933820_48936610.mrna1
Perilla citriodoraTerpenoid · DXRblast+hmm High 45.2%53.9
rna-gnl|WGS:QIYW|chr10_48933820_48936610.mrna1
Perilla frutescens var. hirtellaTerpenoid · DXRblast+hmm High 45.2%53.9
ROMY_c39658_g1_i1_len_265
Rotheca myricoidesTerpenoid · DXRblast+hmm High 97.7%51.9
GlLon_017269-T1
Glechoma longitubaTerpenoid · DXRblast+hmm High 72.6%45.6
HYSU_c44815_g1_i1_len_283
Hyptis suaveolensTerpenoid · DXRblast+hmm High 93.6%44.2
KAL8536413.1
Phlomoides rotataTerpenoid · DXRblast+hmm High 75.4%40.5
GMPH_c26824_g1_i1_len_385
Gmelina philippensisTerpenoid · DXRblast+hmm High 84.6%38.7
PHFR_c184581_g1_i1_len_305
Phlomis fruticosaTerpenoid · DXRblast+hmm High 94.1%37.0
PEBA_c120903_g1_i1_len_267
Petraeovitex bambusetoriumTerpenoid · DXRblast+hmm High 93.3%36.1
Pat_B03G254000.m1
Pogostemon cablinTerpenoid · DXRblast+hmm High 67.4%27.1
KAL8546339.1
Phlomoides rotataTerpenoid · DXRblast+hmm Medium 87.2%41.7
KAL8511836.1
Phlomoides rotataTerpenoid · DXRblast+hmm Medium 86.6%40.8
CAame15G0003370.v1.94
Callicarpa americanaTerpenoid · DXRblast+hmm Medium 70.3%24.8
375368.g1.t1
Ocimum basilicumTerpenoid · DXRblast Medium 89.7%—
385016.g21.t1
Ocimum basilicumTerpenoid · DXRblast Medium 72.7%—
385016.g21.t1.1.5db153b0
Ocimum basilicumTerpenoid · DXRblast Medium 72.7%—
468.g11.t1
Ocimum basilicumTerpenoid · DXRblast Medium 90.0%—
549.g76.t1
Ocimum basilicumTerpenoid · DXRblast Medium 67.4%—
BAPS_c55117_g1_i1_len_476
Ballota pseudodictamnusTerpenoid · DXRblast Medium 92.3%—
CLBU_c7428_g1_i1_len_589
Clerodendrum bungeiTerpenoid · DXRblast Medium 90.1%—
GLHE_c73030_g1_i1_len_346
Glechoma hederaceaTerpenoid · DXRblast Medium 89.7%—
GlLon_025884-T1
Glechoma longitubaTerpenoid · DXRblast Medium 72.3%—
HYSU_c14875_g1_i1_len_251
Hyptis suaveolensTerpenoid · DXRblast Medium 94.0%—
KAL8547553.1
Phlomoides rotataTerpenoid · DXRblast Medium 72.3%—
KAL8547554.1
Phlomoides rotataTerpenoid · DXRblast Medium 83.3%—
LAAN_c35050_g2_i1_len_333
Lavandula angustifoliaTerpenoid · DXRblast Medium 82.3%—
LAAN_c37796_g1_i1_len_251
Lavandula angustifoliaTerpenoid · DXRblast Medium 81.9%—
PLBA_c15990_g1_i1_len_610
Plectranthus barbatusTerpenoid · DXRblast Medium 88.2%—
PLBA_c82045_g1_i1_len_301
Plectranthus barbatusTerpenoid · DXRblast Medium 81.0%—
ROMY_c62233_g1_i1_len_785
Rotheca myricoidesTerpenoid · DXRblast Medium 77.2%—
STOF_c27432_g1_i1_len_359
Stachys officinalisTerpenoid · DXRblast Medium 43.5%—
STOF_c55916_g2_i2_len_588
Stachys officinalisTerpenoid · DXRblast Medium 69.8%—
THVU_c101503_g1_i1_len_255
Thymus vulgarisTerpenoid · DXRblast Medium 88.1%—
scutellaria_barbata_GWHPAOTP033358
Scutellaria barbataTerpenoid · DXRblast Medium 41.3%—