LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

DXS

1-deoxy-D-xylulose 5-phosphate synthase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
1,506
Species with candidates
80
Species with assignments
80
Source assignments
1,535
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers1,506 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
1,535
Public candidate count
1,506
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 7250 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 5750 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 4848 Available
Teucrium marumAjugoideae · Teucrium Stable locus 4646 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 4545 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 4141 Available
Salvia splendensNepetoideae · Salvia Stable locus 3939 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 3535 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 3131 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 2929 Available
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 2828 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 2727 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 2525 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 2323 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 2222 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 2222 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 2222 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 2121 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 2121 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 2121 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 2020 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 2020 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 2020 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 1919 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 1919 No matrix
Lamium albumLamioideae · Lamium Stable locus 1919 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1919 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 1818 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 1818 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 1818 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 1818 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 1818 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 1818 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1717 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 1717 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 1717 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 1717 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1717 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 1717 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1616 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 1616 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 1616 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 1515 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 1515 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 1515 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 1414 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 1414 No matrix
Isodon serraNepetoideae · Isodon Stable locus 1414 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 1414 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 1414 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 1414 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 1414 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 1414 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 1313 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1313 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 1313 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 1313 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 1313 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 1313 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 1212 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 1212 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 1212 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 1212 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 1212 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 1212 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1212 Available
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 1212 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1212 Available
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 1212 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 1212 Available
Clinopodium gracileNepetoideae · Clinopodium Stable locus 1111 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 1111 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 1111 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1111 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 1010 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 1010 Available
Mentha spicataNepetoideae · Mentha Stable locus 1010 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 1010 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 88 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 77 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
XP_047943492.1
Salvia hispanicaTerpenoid · DXSblast+hmm High 66.8%22.4
ocimum_sanctum_Ote100086320132
Ocimum tenuiflorumTerpenoid · DXSblast+hmm High 68.7%22.4
523.g90.t1
Ocimum basilicumTerpenoid · DXSblast+hmm High 82.7%22.3
AG34_scaffold4_11680T
Agastache rugosaTerpenoid · DXSblast+hmm High 84.5%22.3
CAame02G0014350.v1.94
Callicarpa americanaTerpenoid · DXSblast+hmm High 93.9%22.3
GWHPBJVA003259
Thymus quinquecostatusTerpenoid · DXSblast+hmm High 87.6%22.3
KAL8488799.1
Phlomoides rotataTerpenoid · DXSblast+hmm High 80.6%22.3
LECA_c31585_g2_i1_len_2684
Leonurus cardiacaTerpenoid · DXSblast+hmm High 83.8%22.3
LYAM_c36162_g1_i4_len_2653
Lycopus americanusTerpenoid · DXSblast+hmm High 67.5%22.3
MEOF_c15161_g1_i1_len_2833
Melissa officinalisTerpenoid · DXSblast+hmm High 88.7%22.3
Mlonscaffold_5_length_432313370126080.1.v1.326
Mentha longifoliaTerpenoid · DXSblast+hmm High 85.4%22.3
PHFR_c63394_g1_i1_len_2586
Phlomis fruticosaTerpenoid · DXSblast+hmm High 85.4%22.3
ROMY_c56574_g2_i1_len_936
Rotheca myricoidesTerpenoid · DXSblast+hmm High 87.5%22.3
Sbow04G0005270.1
Salvia bowleyanaTerpenoid · DXSblast+hmm High 68.0%22.3
Sbow04G0005510.1
Salvia bowleyanaTerpenoid · DXSblast+hmm High 68.0%22.3
SmilGWHAOSJ000007210009900.1.v1.484
Salvia miltiorrhizaTerpenoid · DXSblast+hmm High 86.4%22.3
Teum.01G017880.3
Teucrium marumTerpenoid · DXSblast+hmm High 67.1%22.3
XP_047975569.1
Salvia hispanicaTerpenoid · DXSblast+hmm High 87.9%22.3
XP_047975570.1
Salvia hispanicaTerpenoid · DXSblast+hmm High 87.9%22.3
g40333.t1
Nepeta catariaTerpenoid · DXSblast+hmm High 68.4%22.3
ocimum_sanctum_Ote100086320131
Ocimum tenuiflorumTerpenoid · DXSblast+hmm High 67.3%22.3
AGFO_c1509_g2_i1_len_2402
Agastache foeniculumTerpenoid · DXSblast+hmm High 88.3%22.2
Clgra_037854-T1
Clinopodium gracileTerpenoid · DXSblast+hmm High 88.0%22.2
DRSE_g20070.t1
Drepanocaryum sewerzowiiTerpenoid · DXSblast+hmm High 87.8%22.2
Dru_4G0010640.1
Dracocephalum rupestreTerpenoid · DXSblast+hmm High 88.4%22.2
GlLon_021324-T1
Glechoma longitubaTerpenoid · DXSblast+hmm High 69.1%22.2
KAL1543182.1
Salvia divinorumTerpenoid · DXSblast+hmm High 88.0%22.2
MACO_g19524.t1
Marmoritis complanataTerpenoid · DXSblast+hmm High 88.7%22.2
MEPI_c62069_g1_i2_len_2697
Mentha x piperitaTerpenoid · DXSblast+hmm High 88.4%22.2
MESP_c41790_g1_i1_len_2685
Mentha spicataTerpenoid · DXSblast+hmm High 88.3%22.2
MODI_c30425_g1_i1_len_2674
Monarda didymaTerpenoid · DXSblast+hmm High 88.2%22.2
Mc1g17960.1
Mosla chinensisTerpenoid · DXSblast+hmm High 68.9%22.2
Ms_c007g04400.1
Mosla soochowensisTerpenoid · DXSblast+hmm High 68.9%22.2
ORMA_c143948_g1_i1_len_2664
Origanum majoranaTerpenoid · DXSblast+hmm High 88.2%22.2
PEAT_c34886_g1_i1_len_2484
Perovskia atriplicifoliaTerpenoid · DXSblast+hmm High 89.1%22.2
PEBA_c43796_g1_i2_len_3816
Petraeovitex bambusetoriumTerpenoid · DXSblast+hmm High 76.6%22.2
Pat_A31G100400.m1
Pogostemon cablinTerpenoid · DXSblast+hmm High 79.9%22.2
Pat_B31G086300.m1
Pogostemon cablinTerpenoid · DXSblast+hmm High 79.3%22.2
Pat_B31G086300.m2
Pogostemon cablinTerpenoid · DXSblast+hmm High 79.8%22.2
Roff21180274300
Salvia rosmarinusTerpenoid · DXSblast+hmm High 88.7%22.2
Roff24100311380
Salvia rosmarinusTerpenoid · DXSblast+hmm High 88.4%22.2
SAOF_c33258_g1_i1_len_2747
Salvia officinalisTerpenoid · DXSblast+hmm High 89.0%22.2
Smil04G0027800.1.v1.484
Salvia miltiorrhizaTerpenoid · DXSblast+hmm High 87.7%22.2
THVU_c53388_g1_i1_len_2496
Thymus vulgarisTerpenoid · DXSblast+hmm High 88.0%22.2
Teucrium_chamaedrys__Tcha132278
Teucrium chamaedrysTerpenoid · DXSblast+hmm High 80.1%22.2
Teucrium_chamaedrys__Tcha138643
Teucrium chamaedrysTerpenoid · DXSblast+hmm High 79.8%22.2
Teucrium_chamaedrys__Tcha138940
Teucrium chamaedrysTerpenoid · DXSblast+hmm High 80.3%22.2
Teucrium_chamaedrys__Tcha72972
Teucrium chamaedrysTerpenoid · DXSblast+hmm High 79.9%22.2
Teum.01G017880.2
Teucrium marumTerpenoid · DXSblast+hmm High 67.5%22.2
Teum.01G017880.7
Teucrium marumTerpenoid · DXSblast+hmm High 72.5%22.2