LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

DXS

1-deoxy-D-xylulose 5-phosphate synthase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
1,506
Species with candidates
80
Species with assignments
80
Source assignments
1,535
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers1,506 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
1,535
Public candidate count
1,506
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 7250 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 5750 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 4848 Available
Teucrium marumAjugoideae · Teucrium Stable locus 4646 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 4545 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 4141 Available
Salvia splendensNepetoideae · Salvia Stable locus 3939 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 3535 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 3131 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 2929 Available
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 2828 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 2727 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 2525 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 2323 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 2222 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 2222 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 2222 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 2121 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 2121 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 2121 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 2020 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 2020 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 2020 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 1919 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 1919 No matrix
Lamium albumLamioideae · Lamium Stable locus 1919 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1919 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 1818 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 1818 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 1818 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 1818 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 1818 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 1818 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1717 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 1717 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 1717 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 1717 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1717 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 1717 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1616 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 1616 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 1616 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 1515 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 1515 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 1515 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 1414 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 1414 No matrix
Isodon serraNepetoideae · Isodon Stable locus 1414 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 1414 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 1414 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 1414 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 1414 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 1414 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 1313 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1313 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 1313 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 1313 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 1313 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 1313 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 1212 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 1212 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 1212 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 1212 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 1212 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 1212 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1212 Available
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 1212 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1212 Available
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 1212 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 1212 Available
Clinopodium gracileNepetoideae · Clinopodium Stable locus 1111 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 1111 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 1111 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1111 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 1010 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 1010 Available
Mentha spicataNepetoideae · Mentha Stable locus 1010 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 1010 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 88 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 77 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Pat_A29G086800.m1
Pogostemon cablinTerpenoid · DXSblast+hmm High 88.7%21.4
Pat_A30G090300.m1
Pogostemon cablinTerpenoid · DXSblast+hmm High 89.0%21.4
Pat_B03G022000.m1
Pogostemon cablinTerpenoid · DXSblast+hmm High 69.8%21.4
Pat_B29G067900.m1
Pogostemon cablinTerpenoid · DXSblast+hmm High 88.7%21.4
Pat_B30G068300.m1
Pogostemon cablinTerpenoid · DXSblast+hmm High 88.9%21.4
ROMY_c81461_g1_i1_len_2687
Rotheca myricoidesTerpenoid · DXSblast+hmm High 88.6%21.4
STOF_c30432_g1_i1_len_1351
Stachys officinalisTerpenoid · DXSblast+hmm High 83.3%21.4
THVU_c77549_g1_i1_len_2691
Thymus vulgarisTerpenoid · DXSblast+hmm High 66.9%21.4
Teucrium_chamaedrys__Tcha117868
Teucrium chamaedrysTerpenoid · DXSblast+hmm High 77.9%21.4
Teucrium_chamaedrys__Tcha12555
Teucrium chamaedrysTerpenoid · DXSblast+hmm High 78.7%21.4
Teum.01G003980.5
Teucrium marumTerpenoid · DXSblast+hmm High 82.6%21.4
Teum.01G006730.1
Teucrium marumTerpenoid · DXSblast+hmm High 78.5%21.4
Teum.01G006730.2
Teucrium marumTerpenoid · DXSblast+hmm High 78.5%21.4
XP_042037430.1
Salvia splendensTerpenoid · DXSblast+hmm High 88.0%21.4
XP_042044046.1
Salvia splendensTerpenoid · DXSblast+hmm High 81.9%21.4
XP_042050293.1
Salvia splendensTerpenoid · DXSblast+hmm High 81.6%21.4
XP_047950192.1
Salvia hispanicaTerpenoid · DXSblast+hmm High 81.9%21.4
evm.model.chr7.998
Prunella vulgarisTerpenoid · DXSblast+hmm High 87.9%21.4
evm.model.chr8.906
Prunella vulgarisTerpenoid · DXSblast+hmm High 86.6%21.4
g21221.t1
Ajuga decumbensTerpenoid · DXSblast+hmm High 88.2%21.4
g39687.t1
Nepeta catariaTerpenoid · DXSblast+hmm High 84.3%21.4
g39687.t1.1.5b2d4a31
Nepeta catariaTerpenoid · DXSblast+hmm High 84.3%21.4
ocimum_sanctum_Ote100163450011
Ocimum tenuiflorumTerpenoid · DXSblast+hmm High 77.2%21.4
origanum_vulgare_871.g53.t1
Origanum vulgareTerpenoid · DXSblast+hmm High 66.9%21.4
origanum_vulgare_871.g53.t1.1.5db0b562
Origanum vulgareTerpenoid · DXSblast+hmm High 66.9%21.4
scutellaria_barbata_GWHPAOTP029013
Scutellaria barbataTerpenoid · DXSblast+hmm High 87.0%21.4
COPY_c73559_g4_i1_len_1690
Cornutia pyramidataTerpenoid · DXSblast+hmm High 84.8%21.3
MEOF_c59040_g1_i1_len_330
Melissa officinalisTerpenoid · DXSblast+hmm High 87.2%21.3
MESP_c43197_g1_i1_len_2664
Mentha spicataTerpenoid · DXSblast+hmm High 79.7%21.3
Ms_c003g01872.1
Mosla soochowensisTerpenoid · DXSblast+hmm High 85.0%21.3
PEAT_c35900_g2_i1_len_2198
Perovskia atriplicifoliaTerpenoid · DXSblast+hmm High 87.5%21.3
PRMI_c16520_g1_i1_len_1669
Premna microphyllaTerpenoid · DXSblast+hmm High 84.8%21.3
STOF_c54567_g1_i1_len_2508
Stachys officinalisTerpenoid · DXSblast+hmm High 86.8%21.3
TECA_c32690_g1_i1_len_2648
Teucrium canadenseTerpenoid · DXSblast+hmm High 82.2%21.3
Teucrium_chamaedrys__Tcha128829
Teucrium chamaedrysTerpenoid · DXSblast+hmm High 78.7%21.3
Teucrium_chamaedrys__Tcha129139
Teucrium chamaedrysTerpenoid · DXSblast+hmm High 82.0%21.3
Teucrium_chamaedrys__Tcha34430
Teucrium chamaedrysTerpenoid · DXSblast+hmm High 81.8%21.3
Teucrium_chamaedrys__Tcha54115
Teucrium chamaedrysTerpenoid · DXSblast+hmm High 81.7%21.3
Teucrium_chamaedrys__Tcha75339
Teucrium chamaedrysTerpenoid · DXSblast+hmm High 81.5%21.3
Teum.01G003980.1
Teucrium marumTerpenoid · DXSblast+hmm High 81.5%21.3
Teum.01G003980.2
Teucrium marumTerpenoid · DXSblast+hmm High 81.5%21.3
Teum.01G003980.3
Teucrium marumTerpenoid · DXSblast+hmm High 81.5%21.3
Teum.01G003980.4
Teucrium marumTerpenoid · DXSblast+hmm High 81.5%21.3
Teum.04G001680.2
Teucrium marumTerpenoid · DXSblast+hmm High 89.3%21.3
XP_042037423.1
Salvia splendensTerpenoid · DXSblast+hmm High 87.7%21.3
evm.model.LG02.146
Clinopodium barosmumTerpenoid · DXSblast+hmm High 67.7%21.3
19:ILLG3G78.36m1
Isodon lophanthoidesTerpenoid · DXSblast+hmm High 86.5%21.2
Dru_7G0006920.1
Dracocephalum rupestreTerpenoid · DXSblast+hmm High 80.0%21.2
GlLon_015077-T1
Glechoma longitubaTerpenoid · DXSblast+hmm High 80.8%21.2
HOSA_c49575_g1_i1_len_3042
Holmskioldia sanguineaTerpenoid · DXSblast+hmm High 89.6%21.2